View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13668_low_2 (Length: 446)
Name: NF13668_low_2
Description: NF13668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13668_low_2 |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 38041236 - 38041651
Alignment:
| Q |
19 |
atttggcgagcgaaattgttaatgccatacaatagataaaaaatcaaccataattttcaccaaagtatgtgctgcttcgaagaacagatggactagattc |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38041236 |
atttggcaagcgaaattgttaatgccatacaatagataaaaaatcaaccataattttcaccaaagtatgtgctgcttcgaagaacagatggacttgattc |
38041335 |
T |
|
| Q |
119 |
tgttggaatatttaacagaaattccaaattttaaagatacaaattataacttagtgtattgttgaaatacatgtaaatgtgtatgtggaggattaatgcg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38041336 |
tgttggaatatttaacagaaattccaaattttaaagatacaaattataacttagtgtattgttgaaatacatgtaaatgtgtatgtggaggattaatgcg |
38041435 |
T |
|
| Q |
219 |
atatttagaaagaaaataaaaatccaaggatatggaaataatcgataaagagagtaaacaaaacaagcattgctaattatctaaagagattatatcaaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38041436 |
atatttagaaagaaaataaaaatccaaggatatggaaataatcgataaagagagtaaacaaaacaagcattgctaattatctaaagagattatatcaaga |
38041535 |
T |
|
| Q |
319 |
attgatcacaaaaagatttcaaccacttagatttattattggctgaaaatcaatgagttgatggatata--attaaagaatgttgtgtaaaaattatacc |
416 |
Q |
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||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38041536 |
attgatcgcgaaaagatttcaaccacttagatttgttattggctgaaaatcaatgagttgatggatataatattaaagaatgttgtgtaaaaattatacc |
38041635 |
T |
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| Q |
417 |
atcgttaaatattctt |
432 |
Q |
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| T |
38041636 |
atcgttaaatattctt |
38041651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 2767504 - 2767572
Alignment:
| Q |
284 |
agcattgctaattatctaaagagattatatcaagaattgatcacaaaaagatttcaaccacttagattt |
352 |
Q |
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| T |
2767504 |
agcattgctatttatatagagagattatatcaagaatggatcacagaatgatttcaaccaattaaattt |
2767572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 24250593 - 24250542
Alignment:
| Q |
284 |
agcattgctaattatctaaagagattatatcaagaattgatcacaaaaagat |
335 |
Q |
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| T |
24250593 |
agcattgctatctatctaaagagattttatcaagaattgatcaagaaaagat |
24250542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 31837570 - 31837773
Alignment:
| Q |
19 |
atttggcgagcgaaattgtt-aatgccatacaatagataaaaaa-tcaaccataattttcaccaaagtat----gtgctgcttcgaagaacagatggact |
112 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
31837570 |
atttggcgagcgaaattgtttaataccatacaatagataaaaaaatcaaccgtaattttcaccaaagtattcatgtgctacttcgaagaacac-tggact |
31837668 |
T |
|
| Q |
113 |
agattctgttggaatatttaacagaaattccaaattttaaagatacaaattataacttagtgtattgttgaaatacatgtaa--atgtgtatgtggagga |
210 |
Q |
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| ||||| ||||||||||||| ||||| |||||||| | | |||||||||||||| ||||||||| ||||||||||||||| || ||||| ||||||| |
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| T |
31837669 |
aagttctgctggaatatttaactgaaatcccaaatttcatatatacaaattataacatagtgtattcttgaaatacatgtaaatatatgtatatggagga |
31837768 |
T |
|
| Q |
211 |
ttaat |
215 |
Q |
| |
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||||| |
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| T |
31837769 |
ttaat |
31837773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 28867154 - 28867194
Alignment:
| Q |
284 |
agcattgctaattatctaaagagattatatcaagaattgat |
324 |
Q |
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||||||| || ||||||||||||||| |||||||||||||| |
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| T |
28867154 |
agcattgttatttatctaaagagattttatcaagaattgat |
28867194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 43579087 - 43579012
Alignment:
| Q |
286 |
cattgctaattatctaaagagattatatcaagaattgatcacaaaaagatttcaaccacttagatttattattggc |
361 |
Q |
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| T |
43579087 |
cattgctatttatctagcgatattatatcaagaattgatcacgaaaagattccagccaattaattttcttattggc |
43579012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 43590976 - 43591050
Alignment:
| Q |
287 |
attgctaattatctaaagagattatatcaagaattgatcacaaaaagatttcaaccacttagatttattattggc |
361 |
Q |
| |
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||||||| |||||| |||||||||| ||||||||||||| |||||||| || ||| |||| ||| |||||||| |
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| T |
43590976 |
attgctatttatcttgcgagattatattaagaattgatcacgaaaagattccagccaattagttttcttattggc |
43591050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 18603 - 18645
Alignment:
| Q |
284 |
agcattgctaattatctaaagagattatatcaagaattgatca |
326 |
Q |
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|||||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
18603 |
agcattgctatttatctaaagagattttattaagaattgatca |
18645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 24068260 - 24068214
Alignment:
| Q |
279 |
aaacaagcattgctaattatctaaagagattatatcaagaattgatc |
325 |
Q |
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|||| |||||||||| ||||||| ||||||| ||||||||||||||| |
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| T |
24068260 |
aaacgagcattgctatttatctagagagattttatcaagaattgatc |
24068214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 48897819 - 48897730
Alignment:
| Q |
284 |
agcattgctaattatctaaagagattatatcaagaattgatcacaaaaagatttcaaccacttagatttattattggctgaaaatcaatg |
373 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||||| |||| ||||| ||||| | | ||| |||| ||||| | ||||||||||| |
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|
| T |
48897819 |
agcattgctatttatctagagagattttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatg |
48897730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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