View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13669_high_12 (Length: 231)
Name: NF13669_high_12
Description: NF13669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13669_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 36376818 - 36377011
Alignment:
| Q |
22 |
gcataagcagaaaagcataa---ccattaatatacatatataaggtagctaactactaaggtagcaactagttgttattcttttgattaagcctagctgc |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36376818 |
gcataagcagaaaagcataataaccattaatatacatatataaggtagctaactacttaggtagcaactagttgttattcttttggttaagcctagctgc |
36376917 |
T |
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| Q |
119 |
ggctgccattgatgcagacactcctccaggatgagtagtgagatatggatcatttctcatttctgcacccgtcaccccttcagcgtctctcctt |
212 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
36376918 |
ggctgccattgatgctgacactcctccaggatgagtagtgagatatggatcatttctcatttctgcacccgtcaccccttcggcatctctcctt |
36377011 |
T |
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