View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13669_high_6 (Length: 292)
Name: NF13669_high_6
Description: NF13669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13669_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 49004732 - 49004875
Alignment:
| Q |
9 |
aaaatgtatactcttaataaaagaaattaacatatttcttgagagaaaaaatgacgaagaaaaaacaaatggtagacgattatcagaatgtaccggcgtt |
108 |
Q |
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| T |
49004732 |
aaaatgtatactcttaataaaagaaattaacatatttcttgagagagaaaatgacgaagaaaaaacaaatgatagacgattatcagaatgcaccggcgtt |
49004831 |
T |
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| Q |
109 |
caaattccttcgtctggtgagaactcaagtttatcaaaggatat |
152 |
Q |
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| T |
49004832 |
aaaattccttgttctggtgagaatttaagtttatcaaaggatat |
49004875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 152 - 268
Target Start/End: Original strand, 49009029 - 49009146
Alignment:
| Q |
152 |
taaatgacgaatttaagtaagaaacgctccttcaatgatgttggtggccatcatccatggtag-aatgattcccggtagcgaaggtgtacttgtaaatac |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
49009029 |
taaatgacgaatttaagtaagaaacgctccttcaatgatgttggtggccatcatccatggtagaaatgattcccggtagcgaaggtgtacttataaatac |
49009128 |
T |
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| Q |
251 |
ttttacgttcaagtatat |
268 |
Q |
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||| || ||||||||||| |
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| T |
49009129 |
tttgacattcaagtatat |
49009146 |
T |
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