View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13669_high_7 (Length: 266)
Name: NF13669_high_7
Description: NF13669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13669_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 38185462 - 38185237
Alignment:
| Q |
28 |
caccacttatataagaacacttagctcgtgctattgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccact |
127 |
Q |
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| T |
38185462 |
caccacttatataagaacacttagcttgtgctattgcattttcacaagccaccattaccatggcgcaaaaccaccacttcctcatcatcacatacccact |
38185363 |
T |
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| Q |
128 |
acacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgcctt |
227 |
Q |
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| T |
38185362 |
acacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatctacttacacactggcctt |
38185263 |
T |
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| Q |
228 |
accaacaaatcaaccatcccgggcct |
253 |
Q |
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| T |
38185262 |
atcaacaaaccaaccatcccaggcct |
38185237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 53 - 265
Target Start/End: Complemental strand, 38180768 - 38180556
Alignment:
| Q |
53 |
tcgtgctattgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctc |
152 |
Q |
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| T |
38180768 |
tcgtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctc |
38180669 |
T |
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| Q |
153 |
caattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcc |
252 |
Q |
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| T |
38180668 |
caattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatctcgggcc |
38180569 |
T |
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| Q |
253 |
tttgcttctccac |
265 |
Q |
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| T |
38180568 |
tttccttcgccac |
38180556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 60 - 253
Target Start/End: Complemental strand, 38170947 - 38170754
Alignment:
| Q |
60 |
attgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcg |
159 |
Q |
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||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
38170947 |
attgcattttcacaatccaccactaccatggcgcaaaaccaccacttcctcatcataacatacccactacaaggtcacataaaccctgccctccaattca |
38170848 |
T |
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| Q |
160 |
ccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcct |
253 |
Q |
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| T |
38170847 |
ccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatccacttatacagtcgccttatcaacaaaccaaccatcccgggcct |
38170754 |
T |
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