View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13669_low_1 (Length: 957)
Name: NF13669_low_1
Description: NF13669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13669_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 817; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 817; E-Value: 0
Query Start/End: Original strand, 18 - 926
Target Start/End: Complemental strand, 27643967 - 27643059
Alignment:
| Q |
18 |
agaaatcacccacctcttctgggtcacattccagtttgtaggtgacgaagaagttaacatcaccgttaacaaaaccatgcttcttaatgttctcactgtc |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27643967 |
agaagtcacccacctcttctgggtcacattccagtttgtaggtgacgaagaagctaacatcaccgttaacaaaaccatgcttcttaatgttctcactgtc |
27643868 |
T |
|
| Q |
118 |
ctcaaatcttctccatcttcctctctcatccatataacactccaaaccggaaccaaacattacatgggtccggttcatgatccggttcggtccaccaaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
27643867 |
ctcaaatcttctccatcttcctctctcatccatataacactccaaaccggaaccaaacattacatgggtccggttcatgatccagttctgtccaccaaac |
27643768 |
T |
|
| Q |
218 |
ttatatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgccccttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27643767 |
ttatatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgccccttc |
27643668 |
T |
|
| Q |
318 |
ggttacatactcgatacatcgatcctctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatatgt |
417 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27643667 |
ggttacatactcgatacatcgatcatctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatatgt |
27643568 |
T |
|
| Q |
418 |
caccatttagggttaccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27643567 |
caccatttagggttaccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcgtgcttgcaaaacaacatgtgt |
27643468 |
T |
|
| Q |
518 |
gggctgcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttt |
617 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27643467 |
gggctgcagttacagaagatgcgaagaaccaagctttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttt |
27643368 |
T |
|
| Q |
618 |
tgatgttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatat |
717 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27643367 |
taatgttaagtttgtggagttgaatgacaaggaagagtttgatttggtggagttaatgcgtgataagggtgagatttgggacctgattgtggaggaatat |
27643268 |
T |
|
| Q |
718 |
gggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagta |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
27643267 |
gggcttcataagaccaaattggaggaaattgcttcctttgaagcaacggtgccagttctgcggtttcagtttcaacatgtatctagtatgaacaaaagta |
27643168 |
T |
|
| Q |
818 |
agaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttg |
917 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||| ||| |
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|
| T |
27643167 |
aggattatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagttgagggagatgaaactcatacccgtctacaaacattg |
27643068 |
T |
|
| Q |
918 |
aattgcatt |
926 |
Q |
| |
|
||||||||| |
|
|
| T |
27643067 |
aattgcatt |
27643059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 23 - 913
Target Start/End: Original strand, 50246929 - 50247819
Alignment:
| Q |
23 |
tcacccacctcttctgggtcacattccagtttgtaggtgacgaagaagttaacatcaccgttaacaaaaccatgcttcttaatgttctcactgtcctcaa |
122 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||| || ||||||||||||||||| ||||||||| ||||||| | ||| ||| |||| || || || |
|
|
| T |
50246929 |
tcacccacatcttctgggtgactttccagtttgtagaagatgaagaagttaacatcactgttaacaaatccatgctccataacgttgtcaccgttcttaa |
50247028 |
T |
|
| Q |
123 |
atcttctccatcttcctctctcatccatataacactccaaaccggaaccaaacattacatgggtccggttcatgatccggttcggtccaccaaacttata |
222 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||||||| | |||| || || ||||| | |||||||||| |
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|
| T |
50247029 |
atcttctccatcttctcctctcacccatataacggtccaaaccggaactaaacattacatgggtccgatatatgaccccgtccggtctaacaaacttata |
50247128 |
T |
|
| Q |
223 |
tgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgccccttcggtta |
322 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||| |||| || | |||||| ||| |
|
|
| T |
50247129 |
tgccacgaaccaccttttaacgagaatatgcctcgactcccttacccaaatttctactacacacttgaggatctcgttgcatcatacacaccttcgatta |
50247228 |
T |
|
| Q |
323 |
catactcgatacatcgatcctctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatatgtcacca |
422 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| || || |||| |||||| ||||| | | |||| |||||| |||||||| ||||||| ||| |
|
|
| T |
50247229 |
catactcaatacatcgatcctctctcataattggcgcatcttcaagaagtgcaatcaacgcgatgatgatgctagcgacgtatgctgcgatatgtcgcca |
50247328 |
T |
|
| Q |
423 |
tttagggttaccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggct |
522 |
Q |
| |
|
| |||||||||| ||||| ||||||||||| | |||||||||||||||||| ||||||||| | ||||| || |||| ||||| ||||||||||||||| |
|
|
| T |
50247329 |
tgtagggttaccgtttcggtatccaggaaatagatacacttgggagcatttttgtgatatgtcagatgcaggtgtgctggcaaagcaacatgtgtgggct |
50247428 |
T |
|
| Q |
523 |
gcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttgatg |
622 |
Q |
| |
|
| ||||||| | | | ||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50247429 |
ggagttacaaagaaagctaagaaccaagcatttaattgtacaaacggtgacattttcacttggaagagtatgtggatgttgcttagtgaggtttttgatg |
50247528 |
T |
|
| Q |
623 |
ttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatatgggct |
722 |
Q |
| |
|
|| ||||||| |||||| |||| || |||||||||||| | ||||| |||||||| ||||||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
50247529 |
ttgagtttgttgagttggatgataaagaagagtttgatatcattgagttgatgcgtgacaagggtgaggtttgggacttgattgtagagaaatatgggct |
50247628 |
T |
|
| Q |
723 |
tcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagtaagaac |
822 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||||||||| | ||||| || | ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50247629 |
tcataagaccaagttgaaggaaattgcttgctttgaagccatggtgccagttgtacggtttgagtttcaacatgtatctagtatgaacaagagtaaagat |
50247728 |
T |
|
| Q |
823 |
tatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaac |
913 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
50247729 |
tatgggtttttagagtatgctgatacgtttaagagtatcaaactctgggtggctaagctgagggagatgaaacttataccctcctaccaac |
50247819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 23 - 919
Target Start/End: Original strand, 50254066 - 50254962
Alignment:
| Q |
23 |
tcacccacctcttctgggtcacattccagtttgtaggtgacgaagaagttaacatcaccgttaacaaaaccatgcttcttaatgttctcactgtcctcaa |
122 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| |||||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
50254066 |
tcacccacctattctgggtcacattccagcttgtagcagacgaagaagttaagatcagcgttaacaaatccatgcttcttaacgttctcactgtcctaaa |
50254165 |
T |
|
| Q |
123 |
atcttctccatcttcctctctcatccatataacactccaaaccggaaccaaacattacatgggtccggttcatgatccggttcggtccaccaaacttata |
222 |
Q |
| |
|
||||| ||| ||||| |||||| |||||||||| | ||||| ||||||||||| ||| ||||||| || ||||| ||||||| ||| ||||||||||| |
|
|
| T |
50254166 |
atcttatccgtcttcgcctctcacccatataacagtacaaacaggaaccaaacactacttgggtccagtgcatgacccggttcagtctaccaaacttatc |
50254265 |
T |
|
| Q |
223 |
tgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgccccttcggtta |
322 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||| |||| |||||||||||||||| |||||||||||| |||| ||||||||| ||||| ||| |
|
|
| T |
50254266 |
tgccacgaaccacctttcgaagagaatatgcctcgactctcttatccaaatttctattacgcgcttgaggatctcgttaaatcctatgcaccttcaatta |
50254365 |
T |
|
| Q |
323 |
catactcgatacatcgatcctctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatatgtcacca |
422 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| || ||||| |||||| ||||| |||| ||| ||||| ||| ||||||||||||| ||| |
|
|
| T |
50254366 |
catactcaatacatcgttcctctatcataataggtgcttcgccaagaagtgcatacaacatgctgatggtactagcgacatacgctgccatatgtcgcca |
50254465 |
T |
|
| Q |
423 |
tttagggttaccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggct |
522 |
Q |
| |
|
|||| ||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||| |||||| |
|
|
| T |
50254466 |
ggtaggattaccgtttcgttttccaggaaataggtacacttgggagcatttctgtgatatgacggatgctcgtgtgctggcaaagcaacatgtatgggct |
50254565 |
T |
|
| Q |
523 |
gcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttgatg |
622 |
Q |
| |
|
||||||||| | | | |||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||| | ||||| || || ||||| || |
|
|
| T |
50254566 |
gcagttacaaagaaggctaagaaccaagcgtttaattgcacaaatggtgacgttttcgcatggaagagtatgtggaaggtgctttgtaagacttttgctg |
50254665 |
T |
|
| Q |
623 |
ttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatatgggct |
722 |
Q |
| |
|
||||||||||||| ||| |||| ||||||||||||||||||| | |||| |||||||||||||||||| ||||||| |||||||||||| ||||| || |
|
|
| T |
50254666 |
ttaagtttgtggatttggatgaaaaggaagagtttgatttggtgcagtttatgcgtgataagggtgaggtttgggatcagattgtggaggagtatggact |
50254765 |
T |
|
| Q |
723 |
tcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagtaagaac |
822 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || ||||| || | || ||||||||||||| ||||||||||||||| |||||||| || |
|
|
| T |
50254766 |
tcataagaccaaattggaggaaattgcttgttttgatgccttggtgccagtttttcgatttgagtttcaacttgtatctagtatgaataagagtaaaaat |
50254865 |
T |
|
| Q |
823 |
tatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaa |
919 |
Q |
| |
|
|||| ||| ||||||||||| || |||||||| ||| | | |||||||||| ||||||||||||||||| |||||| || ||||| ||| ||||| |
|
|
| T |
50254866 |
tatgagttttttgagtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatctcatacccatctacgaacattgaa |
50254962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 863 - 948
Target Start/End: Complemental strand, 27646328 - 27646243
Alignment:
| Q |
863 |
gattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcattatctgtaataatattcttcgac |
948 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
27646328 |
gattctgggtggctaagctgagggagatgaaactcatacccttctaccaacattgaattgcattatctgtaataatattgttcgac |
27646243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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