View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13669_low_11 (Length: 243)
Name: NF13669_low_11
Description: NF13669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13669_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7894258 - 7894483
Alignment:
| Q |
1 |
tcgacatgtcactcgaccaaatcaccactcaccgccgcaccacctccaaccgaccaaatcgcatcctcggcgttcgcagcaactcaatcagaatcactcc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7894258 |
tcgacatgtcactcgatcaaatcaccactcaccgccgcaccacctccaaccgaccaaatcgccacctcggcgttcgcagcaactcagtcagaatcactcc |
7894357 |
T |
|
| Q |
101 |
gtactccatttctcactctcaggtacttcatttctccattc-tttgagtgttgttgtttttcgttttgatcaaaatgagtgattgaattgattcatgaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7894358 |
ttactccatttctcactctcaggtacttcatttctccattcttttcagtgtttttgtttttggttttgatcaaaatgagtgattgaattgattcatgaaa |
7894457 |
T |
|
| Q |
200 |
atgcagatgcttgaaagagaagcgtt |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
7894458 |
atgcagatgcttgaaagagaagcgtt |
7894483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University