View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13669_low_15 (Length: 219)
Name: NF13669_low_15
Description: NF13669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13669_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 54080441 - 54080255
Alignment:
| Q |
17 |
atatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatatctaggtgttcattcttatacatggttcaagaatgctattatat |
116 |
Q |
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| T |
54080441 |
atatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatatctaggtgttcattcttatacaaggttcaagaatgctattatat |
54080342 |
T |
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| Q |
117 |
ttacccttctgagagtgacttactcagtgggggatcattgatcatttctgaactcttcttttggattcatttgttaatgatcatatt |
203 |
Q |
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| T |
54080341 |
ttacccttctgagagtgacttactcagtaggggatcattgatcatttctgaactcttcttttggattcatttgttaatgatcatatt |
54080255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 54083648 - 54083555
Alignment:
| Q |
20 |
tatatcattaactttttgttgcatggtgaccaatttgcacttagattactatatctaggtgttcattcttatacatggttcaagaatgctattat |
114 |
Q |
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| T |
54083648 |
tatatcattaactttttgttgcatgatgatcaatttgcacctagattactatatct-ggtgctcattcttatggaaggttcaagaatgcttttat |
54083555 |
T |
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