View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13669_low_2 (Length: 572)
Name: NF13669_low_2
Description: NF13669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13669_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 216 - 554
Target Start/End: Complemental strand, 48714901 - 48714559
Alignment:
| Q |
216 |
ttataaataaatgtagaaggcacaataacattaaacaaggcgtttagcatcttaatcataatttaagatcagagttatcaaaaactgaatttcaatacag |
315 |
Q |
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| T |
48714901 |
ttataaataaatgtggaaggcacaataacattaaacaaggcgtttagcatcttaatcataatttaagatcagagttatcaaaaattgaatttcaatacag |
48714802 |
T |
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| Q |
316 |
ttttttcttatttnnnnnnnnnnn----tcattataaaagtactaactagctgatggtctttcacccaaacatctataggtctgtcaacattctgagggt |
411 |
Q |
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| T |
48714801 |
ttttttcttatttaaaaaaaaaaaaaaatcattataaaagtactaactggcagatggtctttcacccaaacatctataggtctgtcaacattccgaggat |
48714702 |
T |
|
| Q |
412 |
catagggatctccgttgaagaagtcgggaaccaccacataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacaaaatgt |
511 |
Q |
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| T |
48714701 |
catagggatctccgttgaagaagtcgggaaccaccacataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacgaaatgt |
48714602 |
T |
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| Q |
512 |
aaaccataaggaatgaaacaaccgattcttttacaagtgaaaa |
554 |
Q |
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| T |
48714601 |
aaaccagaaggaatgaaacaaccgattcttttacaagtgaaaa |
48714559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 48715022 - 48714908
Alignment:
| Q |
16 |
atccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataatacatgcaa |
115 |
Q |
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| T |
48715022 |
atccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataatacatgcaa |
48714923 |
T |
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| Q |
116 |
gtaccagaaaattat |
130 |
Q |
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| T |
48714922 |
gtaccagaaaattat |
48714908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 348 - 543
Target Start/End: Complemental strand, 47167993 - 47167800
Alignment:
| Q |
348 |
aaagtactaactagctgatggtctttcacccaaacatctataggtctgtcaacattctgagggtcatagggatctccgttgaagaagtcgggaaccacca |
447 |
Q |
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| T |
47167993 |
aaagtactaactggttgatggtctttactccgaacaagtataggtctgtcaacattctcaggatcatagggatcgccattgaagaaatcaggaacaacca |
47167894 |
T |
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| Q |
448 |
cataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacaaaatgtaaaccataaggaatgaaacaaccgattctttt |
543 |
Q |
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| T |
47167893 |
cataatacccagttgctgcaaccttgtctgcaaacatccttcac-aaacagatcaacaaaatgtaaacca-agggaataaaacagccaattctttt |
47167800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 48702602 - 48702507
Alignment:
| Q |
13 |
aatatccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataata |
108 |
Q |
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| T |
48702602 |
aataaccagcagctccaatagcagaaacacctttactttttaaggcttcaattattggttgggaagcttcaaaacctttgtcctgtaaatgtaata |
48702507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 411 - 517
Target Start/End: Complemental strand, 48696824 - 48696719
Alignment:
| Q |
411 |
tcatagggatctccgttgaagaagtcgggaaccaccacataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacaaaatg |
510 |
Q |
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| T |
48696824 |
tcatagggatcaccatagaagtagtcaggaactaccacataataacctgctgccgcaaccttgtcggcaagattccttcac-aaacagatcaacaaaatg |
48696726 |
T |
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| Q |
511 |
taaacca |
517 |
Q |
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| T |
48696725 |
taaacca |
48696719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 48688301 - 48688231
Alignment:
| Q |
36 |
gaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataa |
106 |
Q |
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| T |
48688301 |
gaaacacctttactttttatggcttcaattatgggttttgcatcttcaaaacctttgtcctattaatataa |
48688231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 32150407 - 32150450
Alignment:
| Q |
27 |
ccaatagtagaaatacctttacttttcaaggcttcaattatggg |
70 |
Q |
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| T |
32150407 |
ccaatagcagaaacacctttactttttaaggcttcaattatggg |
32150450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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