View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13669_low_4 (Length: 387)

Name: NF13669_low_4
Description: NF13669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13669_low_4
NF13669_low_4
[»] chr2 (23 HSPs)
chr2 (274-387)||(30020271-30020383)
chr2 (274-387)||(30040312-30040424)
chr2 (274-387)||(30078689-30078801)
chr2 (274-387)||(30109790-30109902)
chr2 (274-387)||(30121489-30121601)
chr2 (274-387)||(30136494-30136606)
chr2 (274-387)||(30103260-30103372)
chr2 (274-387)||(30234450-30234562)
chr2 (150-190)||(30020147-30020187)
chr2 (150-190)||(30040508-30040548)
chr2 (150-190)||(30078565-30078605)
chr2 (150-190)||(30103456-30103496)
chr2 (150-190)||(30109986-30110026)
chr2 (150-190)||(30121685-30121725)
chr2 (8-52)||(30121833-30121877)
chr2 (150-190)||(30136690-30136730)
chr2 (150-190)||(30234646-30234686)
chr2 (13-52)||(30019999-30020038)
chr2 (13-52)||(30040657-30040696)
chr2 (13-52)||(30110135-30110174)
chr2 (13-52)||(30234795-30234834)
chr2 (14-52)||(30078428-30078466)
chr2 (8-50)||(30136832-30136874)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 9e-46; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 30020271 - 30020383
Alignment:
Q  274 gctgttataaagtggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggg 373  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30020271 gctgttataaagtggtaaaataattctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggg 30020369  T
Q  374 gtgaccatggatgt 387  Q
    ||||||||||||||    
T  30020370 gtgaccatggatgt 30020383  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 30040424 - 30040312
Alignment:
Q  274 gctgttataaagtggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggg 373  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  30040424 gctgttataaagtggtaaaataattctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggg 30040326  T
Q  374 gtgaccatggatgt 387  Q
    ||||||||||||||    
T  30040325 gtgaccatggatgt 30040312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 30078689 - 30078801
Alignment:
Q  274 gctgttataaagtggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggg 373  Q
    |||||||||||||||||||||| |||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30078689 gctgttataaagtggtaaaatatttctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggg 30078787  T
Q  374 gtgaccatggatgt 387  Q
    ||||||||||||||    
T  30078788 gtgaccatggatgt 30078801  T

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Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 30109902 - 30109790
Alignment:
Q  274 gctgttataaagtggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggg 373  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  30109902 gctgttataaagtggtaaaataattctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggg 30109804  T
Q  374 gtgaccatggatgt 387  Q
    ||||||||||||||    
T  30109803 gtgaccatggatgt 30109790  T

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Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 30121601 - 30121489
Alignment:
Q  274 gctgttataaagtggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggg 373  Q
    |||||||||||||||| |||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30121601 gctgttataaagtggttaaataattctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggg 30121503  T
Q  374 gtgaccatggatgt 387  Q
    ||||||||||||||    
T  30121502 gtgaccatggatgt 30121489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 30136606 - 30136494
Alignment:
Q  274 gctgttataaagtggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggg 373  Q
    |||||||||||||||||||||| |||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30136606 gctgttataaagtggtaaaatatttctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggg 30136508  T
Q  374 gtgaccatggatgt 387  Q
    ||||||||||||||    
T  30136507 gtgaccatggatgt 30136494  T

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Target: chr2; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 30103372 - 30103260
Alignment:
Q  274 gctgttataaagtggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggg 373  Q
    |||||||||||||||| ||||| |||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30103372 gctgttataaagtggttaaatatttctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggg 30103274  T
Q  374 gtgaccatggatgt 387  Q
    ||||||||||||||    
T  30103273 gtgaccatggatgt 30103260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 30234562 - 30234450
Alignment:
Q  274 gctgttataaagtggtaaaataattctaggtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggg 373  Q
    |||||||||||||||||||||| |||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  30234562 gctgttataaagtggtaaaatatttctcg-taaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggg 30234464  T
Q  374 gtgaccatggatgt 387  Q
    ||||||||||||||    
T  30234463 gtgaccatggatgt 30234450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 30020147 - 30020187
Alignment:
Q  150 ctaaattgaacacagacacatttttatgccacacgatggtg 190  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30020147 ctaaattgaacacagacacatttttatgccacacgatggtg 30020187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 30040548 - 30040508
Alignment:
Q  150 ctaaattgaacacagacacatttttatgccacacgatggtg 190  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30040548 ctaaattgaacacagacacatttttatgccacacgatggtg 30040508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 30078565 - 30078605
Alignment:
Q  150 ctaaattgaacacagacacatttttatgccacacgatggtg 190  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30078565 ctaaattgaacacagacacatttttatgccacacgatggtg 30078605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 30103496 - 30103456
Alignment:
Q  150 ctaaattgaacacagacacatttttatgccacacgatggtg 190  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30103496 ctaaattgaacacagacacatttttatgccacacgatggtg 30103456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 30110026 - 30109986
Alignment:
Q  150 ctaaattgaacacagacacatttttatgccacacgatggtg 190  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30110026 ctaaattgaacacagacacatttttatgccacacgatggtg 30109986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 30121725 - 30121685
Alignment:
Q  150 ctaaattgaacacagacacatttttatgccacacgatggtg 190  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30121725 ctaaattgaacacagacacatttttatgccacacgatggtg 30121685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 30121877 - 30121833
Alignment:
Q  8 ccaagaaaatcaactaacagctaacaaataagagatggcaataga 52  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  30121877 ccaaaaaaatcaactaacagctaacaaataagagatggcaataga 30121833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 30136730 - 30136690
Alignment:
Q  150 ctaaattgaacacagacacatttttatgccacacgatggtg 190  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30136730 ctaaattgaacacagacacatttttatgccacacgatggtg 30136690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 30234686 - 30234646
Alignment:
Q  150 ctaaattgaacacagacacatttttatgccacacgatggtg 190  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30234686 ctaaattgaacacagacacatttttatgccacacgatggtg 30234646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 30019999 - 30020038
Alignment:
Q  13 aaaatcaactaacagctaacaaataagagatggcaataga 52  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30019999 aaaatcaactaacagctaacaaataagagatggcaataga 30020038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 30040696 - 30040657
Alignment:
Q  13 aaaatcaactaacagctaacaaataagagatggcaataga 52  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30040696 aaaatcaactaacagctaacaaataagagatggcaataga 30040657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 30110174 - 30110135
Alignment:
Q  13 aaaatcaactaacagctaacaaataagagatggcaataga 52  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30110174 aaaatcaactaacagctaacaaataagagatggcaataga 30110135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 30234834 - 30234795
Alignment:
Q  13 aaaatcaactaacagctaacaaataagagatggcaataga 52  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30234834 aaaatcaactaacagctaacaaataagagatggcaataga 30234795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 30078428 - 30078466
Alignment:
Q  14 aaatcaactaacagctaacaaataagagatggcaataga 52  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30078428 aaatcaactaacagctaacaaataagagatggcaataga 30078466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 30136874 - 30136832
Alignment:
Q  8 ccaagaaaatcaactaacagctaacaaataagagatggcaata 50  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  30136874 ccaaaaaaatcaactaacagctaacaaataagagatggcaata 30136832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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