View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13669_low_9 (Length: 263)

Name: NF13669_low_9
Description: NF13669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13669_low_9
NF13669_low_9
[»] chr2 (16 HSPs)
chr2 (19-256)||(30020360-30020597)
chr2 (19-256)||(30121275-30121512)
chr2 (19-256)||(30103046-30103283)
chr2 (19-256)||(30040098-30040335)
chr2 (19-256)||(30109576-30109813)
chr2 (19-256)||(30234236-30234473)
chr2 (19-256)||(30078778-30079003)
chr2 (19-256)||(30136292-30136517)
chr2 (23-210)||(30009127-30009314)
chr2 (23-210)||(30065624-30065811)
chr2 (20-209)||(30168612-30168801)
chr2 (20-203)||(30276943-30277126)
chr2 (24-176)||(30221185-30221337)
chr2 (20-176)||(30249370-30249526)
chr2 (23-176)||(30787720-30787873)
chr2 (22-209)||(30187162-30187349)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 30020597 - 30020360
Alignment:
Q  19 attctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaatt 118  Q
    |||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  30020597 attctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagtt 30020498  T
Q  119 gtcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaatgttattaa 218  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  30020497 gtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaacagtaaattcagcacttttagtagcaaagttattaa 30020398  T
Q  219 taactcccatgagaacatccatggtcacccctttgcta 256  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30020397 taactcccatgacaacatccatggtcacccctttgcta 30020360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 30121275 - 30121512
Alignment:
Q  19 attctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaatt 118  Q
    |||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  30121275 attctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagtt 30121374  T
Q  119 gtcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaatgttattaa 218  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  30121375 gtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaacagtaaattcagcacttttagtagcaaagttattaa 30121474  T
Q  219 taactcccatgagaacatccatggtcacccctttgcta 256  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30121475 taactcccatgacaacatccatggtcacccctttgcta 30121512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 30103046 - 30103283
Alignment:
Q  19 attctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaatt 118  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  30103046 attctggacaatattttcaatctcttcaccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagtt 30103145  T
Q  119 gtcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaatgttattaa 218  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  30103146 gtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaacagtaaattcagcacttttagtagcaaagttattaa 30103245  T
Q  219 taactcccatgagaacatccatggtcacccctttgcta 256  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30103246 taactcccatgacaacatccatggtcacccctttgcta 30103283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 30040098 - 30040335
Alignment:
Q  19 attctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaatt 118  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  30040098 attctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgcaaaatgtcttttattccctccacacgttggacatcagtt 30040197  T
Q  119 gtcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaatgttattaa 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||    
T  30040198 gtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaattgacgaccaatagcttcaaccgtaaattcggcagttttagtagcaaagttagtaa 30040297  T
Q  219 taactcccatgagaacatccatggtcacccctttgcta 256  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30040298 taactcccatgataacatccatggtcacccctttgcta 30040335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 30109576 - 30109813
Alignment:
Q  19 attctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaatt 118  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  30109576 attctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgcaaaatgtcttttattccctccacacgttggacatcagtt 30109675  T
Q  119 gtcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaatgttattaa 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||    
T  30109676 gtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaattgacgaccaatagcttcaaccgtaaattcggcagttttagtagcaaagttagtaa 30109775  T
Q  219 taactcccatgagaacatccatggtcacccctttgcta 256  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30109776 taactcccatgataacatccatggtcacccctttgcta 30109813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 30234236 - 30234473
Alignment:
Q  19 attctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaatt 118  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  30234236 attctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgcaaaatgtcttttattccctccacacgttggacatcagtt 30234335  T
Q  119 gtcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaatgttattaa 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||    
T  30234336 gtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaattgacgaccaatagcttcaaccgtaaattcggcagttttagtagcaaagttagtaa 30234435  T
Q  219 taactcccatgagaacatccatggtcacccctttgcta 256  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30234436 taactcccatgataacatccatggtcacccctttgcta 30234473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 30079003 - 30078778
Alignment:
Q  19 attctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaatt 118  Q
    |||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  30079003 attctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagtt 30078904  T
Q  119 gtcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaatgttattaa 218  Q
    |||||| |||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||    
T  30078903 gtcatcttggtaaggttgcccttgtaat------------caaattgacgaccaatagctttaaccgtaaattcagcagtcttagtagcaaagttaataa 30078816  T
Q  219 taactcccatgagaacatccatggtcacccctttgcta 256  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30078815 taactcccatgacaacatccatggtcacccctttgcta 30078778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 30136292 - 30136517
Alignment:
Q  19 attctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaatt 118  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  30136292 attctggacaatattttcaatctcttccccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagtt 30136391  T
Q  119 gtcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaatgttattaa 218  Q
    |||||| |||||||||||||||||||||            |||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||    
T  30136392 gtcatcttggtaaggttgcccttgtaat------------caaattgacgacgaatagcttcaaccgtaaattcagcagttttagtagcaaagttaataa 30136479  T
Q  219 taactcccatgagaacatccatggtcacccctttgcta 256  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30136480 taactcccatgacaacatccatggtcacccctttgcta 30136517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 30009314 - 30009127
Alignment:
Q  23 tggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaattgtca 122  Q
    ||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||| | ||| ||| |||||||||||    ||||||||| || |||    
T  30009314 tggacaacattttcaatctcttctccgttccttctagcctcatcaacagtgtgttgcacactgtttttaattccctccaacttctggacatcagttttca 30009215  T
Q  123 tcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaat 210  Q
    || |  |||||| | ||||||| ||||||||||||| ||||||||| ||||||| |  |||| ||| ||||||| |||||| ||||||    
T  30009214 tctttttaaggtagtccttgtagtagagtatgtaacgaaattgacgtccaataggtgcaaccataatttcagcaattttagcagcaat 30009127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 30065811 - 30065624
Alignment:
Q  23 tggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaattgtca 122  Q
    ||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||| | ||| ||||||||||||||    |||||||||| || |||    
T  30065811 tggacaacattttcaatctcttctccgttccttctagcctcatcaacagtgtgttgcacactgttttttattccctccatcttttggacatcagttttca 30065712  T
Q  123 tcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaat 210  Q
    || |  |||||| | ||||||| ||||||||||||| ||||||||| ||||||| |  |||| ||| |||||||  ||||| ||||||    
T  30065711 tctttttaaggtagtccttgtagtagagtatgtaacgaaattgacgtccaataggtgcaaccataatttcagcaaatttagcagcaat 30065624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 30168801 - 30168612
Alignment:
Q  20 ttctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaattg 119  Q
    ||||| |||||||| |||||||||| |||||| |||||||||||| ||||| ||||||||| | |  ||||| |||||||||    |||||||| | ||     
T  30168801 ttctgaacaatattctcaatctcttctccgttgcttctagcctcatcaacagtgtgttgcacactagcttttgttccctccagcttttggacattagttt 30168702  T
Q  120 tcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaa 209  Q
    |||||||   |||||| | |||||| ||||||||||||||||||||||||||||||| |  |||| || | |||||| |||||| |||||    
T  30168701 tcatcctttcaaggtttcgcttgtagtagagtatgtaaccaaattgacgaccaataggtacaaccatatactcagcaattttagcagcaa 30168612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 30277126 - 30276943
Alignment:
Q  20 ttctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaattg 119  Q
    |||||||| |||||||||||||||| ||| |||| |||||||||| ||||| ||||||||| | ||||||||| |||||||| |  ||||| | |   ||    
T  30277126 ttctggacgatattttcaatctcttctccattccgtctagcctcatcaacagtgtgttgcacactgtcttttaatccctccagattttggatagcggctg 30277027  T
Q  120 tcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttag 203  Q
    ||| |||   |||||||||||||||||| | |||||||||||||||  | ||||||| |  |||||||||||||| | ||||||    
T  30277026 tcacccttaaaaggttgcccttgtaatatattatgtaaccaaattgttgtccaataggtgcaaccgtaaattcagaaattttag 30276943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 30221337 - 30221185
Alignment:
Q  24 ggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaattgtcat 123  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||| |||| |||| |   ||||||  ||| || |    |||||| |||||| ||||    
T  30221337 ggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacctcaattttcat 30221238  T
Q  124 cctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag 176  Q
    |||   |||||| || ||||| || ||||||||||||||||||| ||||||||    
T  30221237 cctttgaaggtttcctttgtagtatagtatgtaaccaaattgacaaccaatag 30221185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 30249526 - 30249370
Alignment:
Q  20 ttctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaattg 119  Q
    ||||| |||||||||||||||||||  |||||||||||||||||| ||||  |||||||||   | ||||||  ||| |||| |  || ||| ||| ||     
T  30249526 ttctgcacaatattttcaatctcttgcccgttccttctagcctcatcaacggtgtgttgcacgctatcttttgatccttccagatttttgacctcagttc 30249427  T
Q  120 tcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag 176  Q
    |||||||   |||||| | |||||| ||||||||||||||||||||||| |||||||    
T  30249426 tcatcctttcaaggtttctcttgtagtagagtatgtaaccaaattgacgtccaatag 30249370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 30787873 - 30787720
Alignment:
Q  23 tggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaattgtca 122  Q
    |||||||||||||||||||||| ||||||||||||||||| | | ||  |||||||||   | ||||||  ||| ||||    || ||| ||  || |||    
T  30787873 tggacaatattttcaatctcttctccgttccttctagccttatccacggtgtgttgcatgctatcttttgatccttccagctttttgacctcggttctca 30787774  T
Q  123 tcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag 176  Q
    ||||   ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  30787773 tcctttcaaggttgcccttgtagtagagtatgtaaccaaattgacgtccaatag 30787720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 30187162 - 30187349
Alignment:
Q  22 ctggacaatattttcaatctcttttccgttccttctagcctcagcaacattgtgttgcaaaatgtcttttattccctccaaacgttggacatcaattgtc 121  Q
    ||||||||  ||||||||||||| ||| ||  ||||||||||  |||| ||| |||||| | | |||||| |||| || |    |||||||||| ||  |    
T  30187162 ctggacaaacttttcaatctcttctccattatttctagcctcgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttcc 30187261  T
Q  122 atcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcagttttagtagcaa 209  Q
    |||||   ||||||| ||||||| ||||||||||||||||||||||||||||||| |  |||| || | |||||| |||||| |||||    
T  30187262 atcctttgaaggttgtccttgtagtagagtatgtaaccaaattgacgaccaataggtacaaccatatactcagcaattttagcagcaa 30187349  T

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