View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1366_high_5 (Length: 251)

Name: NF1366_high_5
Description: NF1366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1366_high_5
NF1366_high_5
[»] chr7 (3 HSPs)
chr7 (13-251)||(21096857-21097095)
chr7 (41-248)||(21106507-21106711)
chr7 (13-167)||(21095165-21095319)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 21096857 - 21097095
Alignment:
Q  13 aatatggatttctcattcacactatttcttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatccatct 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  21096857 aatatggatttctcattcacactctttcttctagtattggccttttcattcaaatcttcatcttcttttttatcatcattgagaaagggttcatccatct 21096956  T
Q  113 cagtagaaaacccagaagacaaaattatctcacaaaatggcatgttctctgctgggtttacttccattggtgaaaactcatattcctttgccatatggtt 212  Q
    |||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  21096957 cagtagaaaatccacaagaccaaatcatctcacaaaatggcatgttctctgctggttttacttccattggtgaaaattcatattcctttgccatatggtt 21097056  T
Q  213 cacagaaccaacttcccttgacctcaacaagaccatcat 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21097057 cacagaaccaacttcccttgacctcaacaagaccatcat 21097095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 248
Target Start/End: Original strand, 21106507 - 21106711
Alignment:
Q  41 ttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatccatctcagtagaaaacccagaagacaaaattat 140  Q
    |||||||||||||||||| ||| |||| ||||||||||| ||   ||||||||| ||||||||| ||| ||| ||| ||||| |||||||| || || ||    
T  21106507 ttctagtattggcctttttatttcaatgttcatcttcttctt---catcattgagaaagggttcctccctcttagtggaaaatccagaagataacatcat 21106603  T
Q  141 ctcacaaaatggcatgttctctgctgggtttacttccattggtgaaaactcatattcctttgccatatggttcacagaaccaacttcccttgacctcaac 240  Q
     |||||||||||||||||||||||||| |||||| | |||||||| ||  ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  21106604 gtcacaaaatggcatgttctctgctggctttactgctattggtgagaatgcatattcctttgccatatggttcacagaaccaacttccctcaacctcaac 21106703  T
Q  241 aagaccat 248  Q
    || |||||    
T  21106704 aaaaccat 21106711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 21095165 - 21095319
Alignment:
Q  13 aatatggatttctcattcacactatttcttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatccatct 112  Q
    |||||||||||||| || ||||||||||||||| ||||   |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  21095165 aatatggatttctcgtttacactatttcttctaatattaatcttttcattcaaatcttcatcttcttttttatcatcattgagaaagggttcatccatct 21095264  T
Q  113 cagtagaaaacccagaagacaaaattatctcacaaaatggcatgttctctgctgg 167  Q
    |||||||||| ||| |||||||||| ||||||||||||||||  |||||| ||||    
T  21095265 cagtagaaaatccacaagacaaaatcatctcacaaaatggcagattctctactgg 21095319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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