View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1366_low_1 (Length: 701)
Name: NF1366_low_1
Description: NF1366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1366_low_1 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 55 - 701
Target Start/End: Complemental strand, 52096201 - 52095555
Alignment:
| Q |
55 |
tgctcaatggatgtttgatgcatggtcattatgaattaggacagaaagttggaaagtatttgatagagttcgaccctaaacatagcggtaggtacgtcct |
154 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52096201 |
tgctcaatggatgtttgatgcatggtcattatgaattaggacagaaagttggaaagtatttgatagagttcgaccctgaacatagcggtaggtacgtcct |
52096102 |
T |
|
| Q |
155 |
tttggcgaacatgtatgccaatatgggtaagtgggaaggtgtttctgaggtaagaaaactgatgaaagataggggagtggtgatcgtttatggttggagt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52096101 |
tttggcgaacatgtatgccaatatgggtaagtgggaaggtgtttctgaggtaagaaaactgatgaaagataggggagtggtgatcgtttatggttggagt |
52096002 |
T |
|
| Q |
255 |
ttcattgaaattggtcaaaccatacacaagttttttgctgatgataaatgttgtttgtattcaggagaaatttatgaagttttaagccaactaggaaaga |
354 |
Q |
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||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52096001 |
ttcattgaaattgatcaaaccttacacaagttttctgctgatgataaatgttgtttgtattcaggagaaatttatgaagttttaagccacctaggaaaga |
52095902 |
T |
|
| Q |
355 |
aagttgaggaattttcaggagacaaggatacnnnnnnnatttgcaatttgaatcaaataacttgataggtaaagaacttgtaaatgaattttatatgtac |
454 |
Q |
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| T |
52095901 |
aagttgaggaattttcaggagacaaggatgctttttttatttgcaatttgaatcaaataacttgataggtaaagaacttgtaaatgaattttatatgtac |
52095802 |
T |
|
| Q |
455 |
atcgacacattttcaaggtaaatgaaagcaatttgcaggattagatattatcaaattagtaataattcagcatgtgctagttgacattgacccattttca |
554 |
Q |
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| T |
52095801 |
atcgacacattttcaaggtaaatgaaagcaatttgcaggattagatattatcaaattagtaataattcagcatgtgctagttgacattgacccattttca |
52095702 |
T |
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| Q |
555 |
aggtaagtcaaggctttatttttagaaggactcttctctttacatctatgcattgaaggtatcattattttgtctagaaaggtggctgaagtgaaatcat |
654 |
Q |
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| T |
52095701 |
aggtaagtcaaggctttatttttagaaggactcttctctttacatctatgcattgaaggtgtcattatttcgtctataaaggtggctgaagtgaaatcct |
52095602 |
T |
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| Q |
655 |
tgtttattgccccaaacaaacaaaaaagtattgaaaatcaggaaaat |
701 |
Q |
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| T |
52095601 |
tgtttattgccccaaacaaacaaaaaagtattgaaaatcaggaaaat |
52095555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 38179935 - 38179890
Alignment:
| Q |
7 |
ataattcctttgaatggttggattcaaaggatgaatcgtctgtggt |
52 |
Q |
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| T |
38179935 |
ataattactttgaatggttggattcaaaggatgaatcgtctgtggt |
38179890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 38184604 - 38184559
Alignment:
| Q |
7 |
ataattcctttgaatggttggattcaaaggatgaatcgtctgtggt |
52 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38184604 |
ataattactttgaatggttggattcaaaggatgaatcgtctgtggt |
38184559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 55 - 701
Target Start/End: Complemental strand, 36411709 - 36411063
Alignment:
| Q |
55 |
tgctcaatggatgtttgatgcatggtcattatgaattaggacagaaagttggaaagtatttgatagagttcgaccctaaacatagcggtaggtacgtcct |
154 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
36411709 |
tgctcaatggatgtttgatgcatggtcattatgaattggggcagaaagttggcaagtatttgatagagtttgagcctaaacatagcggtaggtacgtcct |
36411610 |
T |
|
| Q |
155 |
tttggcgaacatgtatgccaatatgggtaagtgggaaggtgtttctgaggtaagaaaactgatgaaagataggggagtggtgatcgtttatggttggagt |
254 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
36411609 |
tttggcgaacatgtatgccaatatgggcaagtgggaaggtgtttctgaggtaagaaaactgatgaaagataggggagtgatgattgtttctggttggagt |
36411510 |
T |
|
| Q |
255 |
ttcattgaaattggtcaaaccatacacaagttttttgctgatgataaatgttgtttgtattcaggagaaatttatgaagttttaagccaactaggaaaga |
354 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| || ||||||| |
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| T |
36411509 |
ttcattgaaatcgatcaaaccatacacaagttttttgctgatgataaatgttgtttgtattcaagggaaatttatgatgttttaagccacctgggaaaga |
36411410 |
T |
|
| Q |
355 |
aagttgaggaattttcaggagacaaggatacnnnnnnnatttgcaatttgaatcaaataacttgataggtaaagaacttgtaaatgaattttatatgtac |
454 |
Q |
| |
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|||||||||| ||||||||||||| ||| | |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
36411409 |
aagttgaggatatttcaggagacaatgatgctttttttatttgcaatttgaatc-aataatttgataggtaaagaatttgtaaatgaattttatatgtac |
36411311 |
T |
|
| Q |
455 |
atcgacacattttcaaggtaaatgaaagcaatttgcaggattagatattatcaaattagt-aataattcagcatgtgctagttgacattgacccattttc |
553 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |
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| T |
36411310 |
attgacacattttcaaggtaaatgaaagcaatttgcagggttagatattatcaaattagtaaataattcagcatgtgctggttgacattgacacattttc |
36411211 |
T |
|
| Q |
554 |
aaggtaagtcaaggctttatttttagaaggactcttctctttacatctatgcattgaaggtatcattattttgtctagaaaggtggctgaagtgaaatca |
653 |
Q |
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||||||||| || ||||||||||||| |||||||||||||||||||||||| ||||| || ||||||||| |||| |||| |||||||||||||||| |
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| T |
36411210 |
aaggtaagtgaaagctttatttttagcaggactcttctctttacatctatgggttgaacgtgtcattatttcgtctgtaaagatggctgaagtgaaatcc |
36411111 |
T |
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| Q |
654 |
ttgtttattgccccaaacaaacaaaaaagtattgaaaatcaggaaaat |
701 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
36411110 |
ttgtttgttgccccaaacaaacaaaaaagtattgaaaatgaggaaaat |
36411063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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