View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1366_low_12 (Length: 289)
Name: NF1366_low_12
Description: NF1366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1366_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 32956964 - 32957102
Alignment:
| Q |
1 |
gcttttatttagctttactaaatccaattctattcataaactctgtattcgtatctctctgcccccagagaaaatggaatactactacttcccttttcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32956964 |
gcttttatttagctttactaaatccaattctattcataaactctgtattcgtatctctctgcccccaaagaaaatggaatactactacttcccttttcct |
32957063 |
T |
|
| Q |
101 |
ctcttctttcttttctgcctgttattattctcatgcctc |
139 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
32957064 |
ctcttctttcttttctgcttattaatattctcatgcctc |
32957102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University