View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1366_low_14 (Length: 251)
Name: NF1366_low_14
Description: NF1366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1366_low_14 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 21096853 - 21097095
Alignment:
| Q |
9 |
gaataatatggatttctcattcacactatttcttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatcc |
108 |
Q |
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| T |
21096853 |
gaataatatggatttctcattcacactctttcttctagtattggccttttcattcaaatcttcatcttcttttttatcatcattgagaaagggttcatcc |
21096952 |
T |
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| Q |
109 |
atctcagtagaaaacccagaagacaaaattatctcacaaaatggcatgttctctgctgggtttacttccattggtgaaaactcatattcctttgccatat |
208 |
Q |
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| T |
21096953 |
atctcagtagaaaatccacaagaccaaatcatctcacaaaatggcatgttctctgctggttttacttccattggtgaaaattcatattcctttgccatat |
21097052 |
T |
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| Q |
209 |
ggttcacagaaccaacttcccttgacctcaacaagaccatcat |
251 |
Q |
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| T |
21097053 |
ggttcacagaaccaacttcccttgacctcaacaagaccatcat |
21097095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 21106475 - 21106711
Alignment:
| Q |
9 |
gaataatatggatttctcattcacactatttcttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatcc |
108 |
Q |
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||||||| ||| ||| ||| ||||| | ||| |||||||||||||||||| ||| |||| ||||||||||| || ||||||||| ||||||||| ||| |
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| T |
21106475 |
gaataatttgggtttgtcaatcacagtgtttattctagtattggcctttttatttcaatgttcatcttcttctt---catcattgagaaagggttcctcc |
21106571 |
T |
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| Q |
109 |
atctcagtagaaaacccagaagacaaaattatctcacaaaatggcatgttctctgctgggtttacttccattggtgaaaactcatattcctttgccatat |
208 |
Q |
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| T |
21106572 |
ctcttagtggaaaatccagaagataacatcatgtcacaaaatggcatgttctctgctggctttactgctattggtgagaatgcatattcctttgccatat |
21106671 |
T |
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| Q |
209 |
ggttcacagaaccaacttcccttgacctcaacaagaccat |
248 |
Q |
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| T |
21106672 |
ggttcacagaaccaacttccctcaacctcaacaaaaccat |
21106711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 21095161 - 21095319
Alignment:
| Q |
9 |
gaataatatggatttctcattcacactatttcttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatcc |
108 |
Q |
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|||||||||||||||||| || ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21095161 |
gaataatatggatttctcgtttacactatttcttctaatattaatcttttcattcaaatcttcatcttcttttttatcatcattgagaaagggttcatcc |
21095260 |
T |
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| Q |
109 |
atctcagtagaaaacccagaagacaaaattatctcacaaaatggcatgttctctgctgg |
167 |
Q |
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|||||||||||||| ||| |||||||||| |||||||||||||||| |||||| |||| |
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| T |
21095261 |
atctcagtagaaaatccacaagacaaaatcatctcacaaaatggcagattctctactgg |
21095319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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