View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1366_low_15 (Length: 251)

Name: NF1366_low_15
Description: NF1366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1366_low_15
NF1366_low_15
[»] chr7 (3 HSPs)
chr7 (13-251)||(21096857-21097095)
chr7 (41-248)||(21106507-21106711)
chr7 (13-167)||(21095165-21095319)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 21096857 - 21097095
Alignment:
Q  13 aatatggatttctcattcacactatttcttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatccatct 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  21096857 aatatggatttctcattcacactctttcttctagtattggccttttcattcaaatcttcatcttcttttttatcatcattgagaaagggttcatccatct 21096956  T
Q  113 cagtagaaaacccagaagacaaaattatctcacaaaatggcatgttctctgctgggtttacttccattggtgaaaactcatattcctttgccatatggtt 212  Q
    |||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  21096957 cagtagaaaatccacaagaccaaatcatctcacaaaatggcatgttctctgctggttttacttccattggtgaaaattcatattcctttgccatatggtt 21097056  T
Q  213 cacagaaccaacttcccttgacctcaacaagaccatcat 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21097057 cacagaaccaacttcccttgacctcaacaagaccatcat 21097095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 248
Target Start/End: Original strand, 21106507 - 21106711
Alignment:
Q  41 ttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatccatctcagtagaaaacccagaagacaaaattat 140  Q
    |||||||||||||||||| ||| |||| ||||||||||| ||   ||||||||| ||||||||| ||| ||| ||| ||||| |||||||| || || ||    
T  21106507 ttctagtattggcctttttatttcaatgttcatcttcttctt---catcattgagaaagggttcctccctcttagtggaaaatccagaagataacatcat 21106603  T
Q  141 ctcacaaaatggcatgttctctgctgggtttacttccattggtgaaaactcatattcctttgccatatggttcacagaaccaacttcccttgacctcaac 240  Q
     |||||||||||||||||||||||||| |||||| | |||||||| ||  ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  21106604 gtcacaaaatggcatgttctctgctggctttactgctattggtgagaatgcatattcctttgccatatggttcacagaaccaacttccctcaacctcaac 21106703  T
Q  241 aagaccat 248  Q
    || |||||    
T  21106704 aaaaccat 21106711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 21095165 - 21095319
Alignment:
Q  13 aatatggatttctcattcacactatttcttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatccatct 112  Q
    |||||||||||||| || ||||||||||||||| ||||   |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  21095165 aatatggatttctcgtttacactatttcttctaatattaatcttttcattcaaatcttcatcttcttttttatcatcattgagaaagggttcatccatct 21095264  T
Q  113 cagtagaaaacccagaagacaaaattatctcacaaaatggcatgttctctgctgg 167  Q
    |||||||||| ||| |||||||||| ||||||||||||||||  |||||| ||||    
T  21095265 cagtagaaaatccacaagacaaaatcatctcacaaaatggcagattctctactgg 21095319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University