View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1366_low_2 (Length: 492)
Name: NF1366_low_2
Description: NF1366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1366_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 65 - 402
Target Start/End: Complemental strand, 26649505 - 26649164
Alignment:
| Q |
65 |
tttatatttcatatccacctaaaccctaatactagnnnnnnnaagcaaatctgatcgtaagaatagagagagaagcggcgacaacgcagaaacacaggta |
164 |
Q |
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| T |
26649505 |
tttatatttcatatccacctaaaccctaatactagtttttt-aagcaaatctgatcgtaagaatagagagagaagcggcgacaacgcagaaacacaggta |
26649407 |
T |
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| Q |
165 |
gcttgaattgaatcttcttattataatctgtattaatcaatttcatgttatagtgtttatgtgtgtattgtattgg-----tggtatgagattatagggt |
259 |
Q |
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| T |
26649406 |
gcttgaattgaatcttcttattataatctgtattaatcaatttcatgttatagtgtttatgtgtgtattgtattgtattgctggtatgagattatagggt |
26649307 |
T |
|
| Q |
260 |
tttgtttcaacaggagaaaatttgatacaattttttgattttgaaagaaagatgaaggtgaaggagcttaaaatttgtaagcatctctttaaacatagca |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26649306 |
tttgtttcaacaggagaaaatttgatacaattttttgattttgaaagaaagatgaaggtgaaggagcttaaaatttgtaagcatctctttaaacatagca |
26649207 |
T |
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| Q |
360 |
acaaaatctccttttgttgatactcatacttattgtcctctct |
402 |
Q |
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| T |
26649206 |
acaaaatctccttttgttgatactcatacttattgtcctctct |
26649164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 13669369 - 13669434
Alignment:
| Q |
253 |
atagggttttgtttcaacaggagaaaatttgatacaattttttgattttgaaagaaagatgaaggt |
318 |
Q |
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| T |
13669369 |
atagggttttgtttcaacaggagaaaatttcatacaattttttgattttgaaagaaagatggaggt |
13669434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 13682226 - 13682291
Alignment:
| Q |
253 |
atagggttttgtttcaacaggagaaaatttgatacaattttttgattttgaaagaaagatgaaggt |
318 |
Q |
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| T |
13682226 |
atagggttttgtttcaacaggagaaaatttcatacaattttttgattttgaaagaaagatggaggt |
13682291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 184 - 402
Target Start/End: Complemental strand, 8599079 - 8598872
Alignment:
| Q |
184 |
attataatctgtattaatcaatttcatgttatagtgtttatgtgtgtattgtattggtggtatgagattatagggttttgtttcaacaggagaaaatttg |
283 |
Q |
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| T |
8599079 |
attataatctctattaatcaatttcatgttatagtgtttatgtgt--atcgtattggtggtataagat---agggttttgtttcaacaggagaaaatttc |
8598985 |
T |
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| Q |
284 |
atacaattttttgattttgaaagaaagatgaagg-tgaaggagcttaaaatttgtaagcatctctttaaacatagcaacaaaatctccttttgttgatac |
382 |
Q |
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||| ||||||||||||||| ||||||||| ||| ||| || ||| ||||||||||||||||||||| ||||||||||||||||| || ||| |
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| T |
8598984 |
ataatattttttgattttgatagaaagatggaggcggaaaaag----aaaattgtaagcatctctttaaacacagcaacaaaatctcctt---tttataa |
8598892 |
T |
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| Q |
383 |
tcatacttattgtcctctct |
402 |
Q |
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| T |
8598891 |
tcatacttattgtcctctct |
8598872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 43560948 - 43560872
Alignment:
| Q |
404 |
ctccaaatatctataataggtggttcaaggtgaacgttattcataatgtgggtggtaacaatgttaaggtttatatt |
480 |
Q |
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| T |
43560948 |
ctccaaatatctataataggtggttcaaggtgaacgttattcataatgtgggtgctaacaatgttaaggtttatatt |
43560872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 36996332 - 36996296
Alignment:
| Q |
336 |
gtaagcatctctttaaacatagcaacaaaatctcctt |
372 |
Q |
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| T |
36996332 |
gtaagcatctctttaaacatagcaagaagatctcctt |
36996296 |
T |
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