View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1366_low_3 (Length: 488)

Name: NF1366_low_3
Description: NF1366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1366_low_3
NF1366_low_3
[»] chr2 (11 HSPs)
chr2 (146-459)||(17838549-17838863)
chr2 (19-66)||(17839238-17839285)
chr2 (26-64)||(31572465-31572503)
chr2 (19-55)||(6120745-6120781)
chr2 (19-55)||(8700454-8700490)
chr2 (19-55)||(18351744-18351780)
chr2 (19-55)||(19596363-19596399)
chr2 (19-55)||(20545018-20545054)
chr2 (19-55)||(27944796-27944832)
chr2 (19-55)||(41664703-41664739)
chr2 (19-55)||(44902274-44902310)
[»] chr3 (27 HSPs)
chr3 (19-61)||(20370358-20370400)
chr3 (19-66)||(27818318-27818365)
chr3 (13-55)||(54073223-54073265)
chr3 (146-179)||(27818445-27818478)
chr3 (16-55)||(4584431-4584470)
chr3 (12-55)||(25437286-25437329)
chr3 (17-55)||(1941718-1941756)
chr3 (17-55)||(46590274-46590312)
chr3 (21-55)||(53556913-53556947)
chr3 (146-179)||(4867037-4867070)
chr3 (157-185)||(3524330-3524358)
chr3 (19-55)||(3898615-3898651)
chr3 (19-55)||(6460168-6460204)
chr3 (19-55)||(12264393-12264429)
chr3 (19-55)||(21098497-21098533)
chr3 (19-55)||(26948991-26949027)
chr3 (19-55)||(30761267-30761303)
chr3 (19-55)||(34121548-34121584)
chr3 (19-55)||(36076454-36076490)
chr3 (28-64)||(37099728-37099764)
chr3 (19-55)||(38653927-38653963)
chr3 (19-55)||(40014653-40014689)
chr3 (19-55)||(43363611-43363647)
chr3 (19-55)||(44751632-44751668)
chr3 (157-185)||(46590414-46590442)
chr3 (157-185)||(46590674-46590702)
chr3 (19-55)||(49672755-49672791)
[»] chr6 (18 HSPs)
chr6 (19-61)||(2737136-2737178)
chr6 (17-64)||(33289068-33289115)
chr6 (12-55)||(12597258-12597301)
chr6 (9-55)||(6300699-6300745)
chr6 (9-55)||(6307509-6307555)
chr6 (19-64)||(8657064-8657109)
chr6 (19-55)||(162669-162705)
chr6 (19-55)||(2266969-2267005)
chr6 (19-55)||(3593086-3593122)
chr6 (19-55)||(4096316-4096352)
chr6 (157-185)||(4440160-4440188)
chr6 (157-185)||(4440420-4440448)
chr6 (19-55)||(4440550-4440586)
chr6 (19-55)||(8539746-8539782)
chr6 (157-185)||(28062784-28062812)
chr6 (19-55)||(28062913-28062949)
chr6 (19-55)||(28099597-28099633)
chr6 (19-55)||(33646135-33646171)
[»] chr7 (18 HSPs)
chr7 (19-66)||(13950998-13951045)
chr7 (19-61)||(11001324-11001366)
chr7 (14-64)||(31097896-31097946)
chr7 (146-179)||(13950887-13950920)
chr7 (19-55)||(8026626-8026662)
chr7 (19-55)||(13786363-13786399)
chr7 (19-55)||(16376545-16376581)
chr7 (19-55)||(20392608-20392644)
chr7 (19-55)||(20912450-20912486)
chr7 (157-185)||(20912588-20912616)
chr7 (19-55)||(21342016-21342052)
chr7 (19-55)||(21804572-21804608)
chr7 (19-55)||(27903417-27903453)
chr7 (19-55)||(31373649-31373685)
chr7 (19-55)||(33916947-33916983)
chr7 (19-55)||(38163339-38163375)
chr7 (19-55)||(40969084-40969120)
chr7 (19-55)||(42242154-42242190)
[»] chr1 (16 HSPs)
chr1 (19-66)||(30401632-30401679)
chr1 (19-66)||(30408189-30408236)
chr1 (19-66)||(35165442-35165489)
chr1 (19-65)||(1231979-1232025)
chr1 (19-65)||(2951366-2951412)
chr1 (17-55)||(31018198-31018236)
chr1 (17-55)||(52957069-52957107)
chr1 (19-55)||(4266574-4266610)
chr1 (19-55)||(4325454-4325490)
chr1 (19-55)||(9216224-9216260)
chr1 (19-55)||(18855233-18855269)
chr1 (157-185)||(28546769-28546797)
chr1 (19-55)||(28947454-28947490)
chr1 (19-55)||(29942211-29942247)
chr1 (19-55)||(34888686-34888722)
chr1 (19-55)||(38913747-38913783)
[»] scaffold1234 (1 HSPs)
scaffold1234 (11-55)||(1047-1091)
[»] scaffold0323 (1 HSPs)
scaffold0323 (19-55)||(11792-11828)
[»] chr8 (15 HSPs)
chr8 (19-55)||(18997893-18997929)
chr8 (19-64)||(405354-405399)
chr8 (146-179)||(1598513-1598546)
chr8 (19-55)||(995815-995851)
chr8 (19-55)||(5769490-5769526)
chr8 (19-55)||(6299020-6299056)
chr8 (19-55)||(10478130-10478166)
chr8 (19-55)||(11071961-11071997)
chr8 (26-66)||(11145372-11145412)
chr8 (19-55)||(15961325-15961361)
chr8 (19-55)||(18175574-18175610)
chr8 (19-55)||(23353622-23353658)
chr8 (19-55)||(24471872-24471908)
chr8 (19-55)||(30473884-30473920)
chr8 (19-55)||(32110861-32110897)
[»] chr5 (16 HSPs)
chr5 (13-55)||(20655043-20655085)
chr5 (18-55)||(4082592-4082629)
chr5 (19-55)||(2398942-2398978)
chr5 (19-55)||(10729442-10729478)
chr5 (19-55)||(16349715-16349751)
chr5 (19-55)||(16526306-16526342)
chr5 (19-55)||(17373161-17373197)
chr5 (19-55)||(20874881-20874917)
chr5 (19-55)||(25099236-25099272)
chr5 (19-55)||(25158326-25158362)
chr5 (19-55)||(34107338-34107374)
chr5 (19-55)||(34110845-34110881)
chr5 (19-55)||(37713652-37713688)
chr5 (157-185)||(37714048-37714076)
chr5 (19-55)||(38246865-38246901)
chr5 (19-55)||(40177234-40177270)
[»] chr4 (14 HSPs)
chr4 (17-55)||(37590802-37590840)
chr4 (19-64)||(23976706-23976751)
chr4 (19-55)||(8371080-8371116)
chr4 (19-55)||(12090459-12090495)
chr4 (19-55)||(16904952-16904988)
chr4 (19-55)||(18209704-18209740)
chr4 (10-54)||(23143178-23143222)
chr4 (26-66)||(27707361-27707401)
chr4 (19-55)||(30824922-30824958)
chr4 (19-55)||(31965969-31966005)
chr4 (19-55)||(33139471-33139507)
chr4 (19-55)||(37651859-37651895)
chr4 (19-55)||(44376079-44376115)
chr4 (19-55)||(52434817-52434853)
[»] scaffold0896 (1 HSPs)
scaffold0896 (19-64)||(1101-1146)
[»] scaffold0031 (1 HSPs)
scaffold0031 (19-55)||(46467-46503)
[»] scaffold0022 (1 HSPs)
scaffold0022 (19-55)||(149050-149086)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 146 - 459
Target Start/End: Complemental strand, 17838863 - 17838549
Alignment:
Q  146 gaccttaaatcggtagattgcggaaaatctccttgtaaacataaccacaattttatccatggatgatatatcaagcacttactataaa-catggaatagt 244  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| |||| ||    
T  17838863 gaccttaaatcggtagattgcagaaaatctccttctaaacataaccacaattttatgcatggatgatatatcaagcacttaatataaaacatagaatggt 17838764  T
Q  245 gtgaaatattgcatacaattggaagttaaatttgtacatattaacttgatatcttcgaaattaaatctgtgcataataatagtttgttcagaaataaaaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17838763 gtgaaatattgcatacaattggaagttaaatttgtacatattaacttgatatcttcgaaattaaatatgtgcataataatagtttgttcagaaataaaaa 17838664  T
Q  345 tccggaagtttgtatattcattataatttagcatatgggagaaggattaacaatatctaagcagctataggtcgccaatttcgttaaaccaatggttttc 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  17838663 tccggaagtttgtatattcattataatttagcatatgggagaaggattaacaatatctaagcagctataggttgccaatttcgttaaaccaatggtcttc 17838564  T
Q  445 gcaggatagtggaag 459  Q
    |||||||||||||||    
T  17838563 gcaggatagtggaag 17838549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 17839285 - 17839238
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaaac 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17839285 actagaccatccacccgtgctgccgcacgggtcatatcgattggaaac 17839238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 31572503 - 31572465
Alignment:
Q  26 catccacccgtgctgccgcacgggtcatatcgattgtaa 64  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  31572503 catccacccgtgctgccgcacgggtcatatacattgtaa 31572465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 6120781 - 6120745
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6120781 actagactttccacccgtgctgccgcacgggtcatat 6120745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 8700490 - 8700454
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  8700490 actagactttccacccgtgctgccgcacgggtcatat 8700454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 18351780 - 18351744
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18351780 actagactttccacccgtgctgccgcacgggtcatat 18351744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 19596363 - 19596399
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  19596363 actagactttccacccgtgctgccgcacgggtcatat 19596399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 20545054 - 20545018
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  20545054 actagactttccacccgtgctgccgcacgggtcatat 20545018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 27944796 - 27944832
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  27944796 actagactttccacccgtgctgccgcacgggtcatat 27944832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 41664739 - 41664703
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41664739 actagactttccacccgtgctgccgcacgggtcatat 41664703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 44902310 - 44902274
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  44902310 actagactttccacccgtgctgccgcacgggtcatat 44902274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 20370358 - 20370400
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattg 61  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  20370358 actagaccatccacccgtgctgccgcacgggtcatatcgattg 20370400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 27818318 - 27818365
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaaac 66  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| ||||    
T  27818318 actagaccatcgacccgtgctgccgcacgggtcatctcgattggaaac 27818365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 54073265 - 54073223
Alignment:
Q  13 attaacactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||||||  ||||||||||||||||||||||||||||    
T  54073265 attaacactagactttccacccgtgctgccgcacgggtcatat 54073223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 27818445 - 27818478
Alignment:
Q  146 gaccttaaatcggtagattgcggaaaatctcctt 179  Q
    ||||||||||||||||||||||||||||||||||    
T  27818445 gaccttaaatcggtagattgcggaaaatctcctt 27818478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 4584431 - 4584470
Alignment:
Q  16 aacactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  4584431 aacactagactttccacccgtgctgccgcacgggtcatat 4584470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 25437329 - 25437286
Alignment:
Q  12 tattaacactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||| |||||||| | ||||||||||||||||||||||||||    
T  25437329 tattaatactagaccttgcacccgtgctgccgcacgggtcatat 25437286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 1941718 - 1941756
Alignment:
Q  17 acactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  1941718 acactagactttccacccgtgctgccgcacgggtcatat 1941756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 46590274 - 46590312
Alignment:
Q  17 acactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  46590274 acactagaccatccacccgtgctgtcgcccgggtcatat 46590312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 53556913 - 53556947
Alignment:
Q  21 tagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||| ||||||||||||||||||||||||||||||    
T  53556913 tagatcatccacccgtgctgccgcacgggtcatat 53556947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 4867070 - 4867037
Alignment:
Q  146 gaccttaaatcggtagattgcggaaaatctcctt 179  Q
    ||||||||||||||||||||| ||||||||||||    
T  4867070 gaccttaaatcggtagattgcagaaaatctcctt 4867037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 3524330 - 3524358
Alignment:
Q  157 ggtagattgcggaaaatctccttgtaaac 185  Q
    |||||||||||||||||||||||||||||    
T  3524330 ggtagattgcggaaaatctccttgtaaac 3524358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 3898651 - 3898615
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  3898651 actagactttccacccgtgctgccgcacgggtcatat 3898615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 6460168 - 6460204
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6460168 actagactttccacccgtgctgccgcacgggtcatat 6460204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 12264429 - 12264393
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  12264429 actagactttccacccgtgctgccgcacgggtcatat 12264393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 21098533 - 21098497
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  21098533 actagactttccacccgtgctgccgcacgggtcatat 21098497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 26949027 - 26948991
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  26949027 actagactttccacccgtgctgccgcacgggtcatat 26948991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 30761267 - 30761303
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||||||||||||||  ||||||||||||||    
T  30761267 actagaccatccacccgtgctatcgcacgggtcatat 30761303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 34121584 - 34121548
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  34121584 actagactttccacccgtgctgccgcacgggtcatat 34121548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 36076454 - 36076490
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36076454 actagactttccacccgtgctgccgcacgggtcatat 36076490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 37099764 - 37099728
Alignment:
Q  28 tccacccgtgctgccgcacgggtcatatcgattgtaa 64  Q
    ||||||||||||||||||||||||||||  |||||||    
T  37099764 tccacccgtgctgccgcacgggtcatatacattgtaa 37099728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 38653927 - 38653963
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  38653927 actagactttccacccgtgctgccgcacgggtcatat 38653963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 40014653 - 40014689
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40014653 actagactttccacccgtgctgccgcacgggtcatat 40014689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 43363611 - 43363647
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  43363611 actagactttccacccgtgctgccgcacgggtcatat 43363647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 44751632 - 44751668
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  44751632 actagatcatccacccatgctgccgcacgggtcatat 44751668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 46590414 - 46590442
Alignment:
Q  157 ggtagattgcggaaaatctccttgtaaac 185  Q
    |||||||||||||||||||||||||||||    
T  46590414 ggtagattgcggaaaatctccttgtaaac 46590442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 46590674 - 46590702
Alignment:
Q  157 ggtagattgcggaaaatctccttgtaaac 185  Q
    |||||||||||||||||||||||||||||    
T  46590674 ggtagattgcggaaaatctccttgtaaac 46590702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 49672791 - 49672755
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  49672791 actagactttccacccgtgctgccgcacgggtcatat 49672755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 2737178 - 2737136
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattg 61  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  2737178 actagaccatccacccgtgctgccgcacgggtcatattgattg 2737136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 33289068 - 33289115
Alignment:
Q  17 acactagaccatccacccgtgctgccgcacgggtcatatcgattgtaa 64  Q
    |||||||| | |||||||||||||||||||||||||||| ||||||||    
T  33289068 acactagatcgtccacccgtgctgccgcacgggtcatatagattgtaa 33289115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 12597258 - 12597301
Alignment:
Q  12 tattaacactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||| |||||||  ||||||||||||||||||||||||||||    
T  12597258 tattaaaactagactttccacccgtgctgccgcacgggtcatat 12597301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 6300699 - 6300745
Alignment:
Q  9 tcatattaacactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    ||||| ||| ||||||| || ||||||||||||||||||||||||||    
T  6300699 tcataataagactagactatgcacccgtgctgccgcacgggtcatat 6300745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 6307509 - 6307555
Alignment:
Q  9 tcatattaacactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    ||||| ||| ||||||| || ||||||||||||||||||||||||||    
T  6307509 tcataataagactagactatgcacccgtgctgccgcacgggtcatat 6307555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 8657064 - 8657109
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaa 64  Q
    |||||| | ||||||||||||||||||||||||||||  |||||||    
T  8657064 actagatcgtccacccgtgctgccgcacgggtcatatacattgtaa 8657109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 162669 - 162705
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  162669 actagactttccacccgtgctgccgcacgggtcatat 162705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 2267005 - 2266969
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  2267005 actagactttccacccgtgctgccgcacgggtcatat 2266969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 3593122 - 3593086
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  3593122 actagactttccacccgtgctgccgcacgggtcatat 3593086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 4096352 - 4096316
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  4096352 actagaccatccacccgtgctgtcgcccgggtcatat 4096316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 4440188 - 4440160
Alignment:
Q  157 ggtagattgcggaaaatctccttgtaaac 185  Q
    |||||||||||||||||||||||||||||    
T  4440188 ggtagattgcggaaaatctccttgtaaac 4440160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 4440448 - 4440420
Alignment:
Q  157 ggtagattgcggaaaatctccttgtaaac 185  Q
    |||||||||||||||||||||||||||||    
T  4440448 ggtagattgcggaaaatctccttgtaaac 4440420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 4440586 - 4440550
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  4440586 actagaccatccacccgtgctgtcgcccgggtcatat 4440550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 8539782 - 8539746
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  8539782 actagactttccacccgtgctgccgcacgggtcatat 8539746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 28062812 - 28062784
Alignment:
Q  157 ggtagattgcggaaaatctccttgtaaac 185  Q
    |||||||||||||||||||||||||||||    
T  28062812 ggtagattgcggaaaatctccttgtaaac 28062784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 28062949 - 28062913
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  28062949 actagaccatccacccgtgctgtcgcccgggtcatat 28062913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 28099597 - 28099633
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  28099597 actagactttccacccgtgctgccgcacgggtcatat 28099633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 33646171 - 33646135
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  33646171 actagactttccacccgtgctgccgcacgggtcatat 33646135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 13951045 - 13950998
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaaac 66  Q
    |||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  13951045 actagaccatccacccgtgctgtcgcacgggtcatctcgattgaaaac 13950998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 11001324 - 11001366
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattg 61  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  11001324 actagaccttccacccgtgctgccgcacgggtcatattgattg 11001366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 31097946 - 31097896
Alignment:
Q  14 ttaacactagaccatccacccgtgctgccgcacgggtcatatcgattgtaa 64  Q
    |||| |||||| | ||||||||||||||||||||||||||||  |||||||    
T  31097946 ttaaaactagatcgtccacccgtgctgccgcacgggtcatatacattgtaa 31097896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 13950920 - 13950887
Alignment:
Q  146 gaccttaaatcggtagattgcggaaaatctcctt 179  Q
    ||||||||||||||||||||| ||||||||||||    
T  13950920 gaccttaaatcggtagattgcagaaaatctcctt 13950887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 8026626 - 8026662
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||||||||||||| || |||||||||||||    
T  8026626 actagaccatccacccgtgcggcagcacgggtcatat 8026662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 13786399 - 13786363
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13786399 actagactttccacccgtgctgccgcacgggtcatat 13786363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 16376545 - 16376581
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  16376545 actagactttccacccgtgctgccgcacgggtcatat 16376581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 20392644 - 20392608
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  20392644 actagaccatccacccgtgctgtcgcccgggtcatat 20392608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 20912450 - 20912486
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  20912450 actagaccatccacccgtgctgccgcccgagtcatat 20912486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 20912588 - 20912616
Alignment:
Q  157 ggtagattgcggaaaatctccttgtaaac 185  Q
    |||||||||||||||||||||||||||||    
T  20912588 ggtagattgcggaaaatctccttgtaaac 20912616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 21342052 - 21342016
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  21342052 actagactttccacccgtgctgccgcacgggtcatat 21342016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 21804572 - 21804608
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  21804572 actagactttccacccgtgctgccgcacgggtcatat 21804608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 27903417 - 27903453
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  27903417 actagactttccacccgtgctgccgcacgggtcatat 27903453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 31373685 - 31373649
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  31373685 actagactttccacccgtgctgccgcacgggtcatat 31373649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 33916947 - 33916983
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  33916947 actagactttccacccgtgctgccgcacgggtcatat 33916983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 38163339 - 38163375
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  38163339 actagactttccacccgtgctgccgcacgggtcatat 38163375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 40969120 - 40969084
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40969120 actagactttccacccgtgctgccgcacgggtcatat 40969084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 42242154 - 42242190
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  42242154 actagactttccacccgtgctgccgcacgggtcatat 42242190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 30401632 - 30401679
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaaac 66  Q
    |||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  30401632 actagaccatccacccgtgctgtcgcacgggtcatctcgattggaaac 30401679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 30408189 - 30408236
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaaac 66  Q
    |||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  30408189 actagaccatccacccgtgctgtcgcacgggtcatctcgattggaaac 30408236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 35165489 - 35165442
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaaac 66  Q
    |||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  35165489 actagaccatccacccgtgctgtcgcacgggtcatctcgattggaaac 35165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 1232025 - 1231979
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaaa 65  Q
    |||||||  ||||||||||||||||||||||||||||  ||||||||    
T  1232025 actagactttccacccgtgctgccgcacgggtcatatacattgtaaa 1231979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 2951366 - 2951412
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaaa 65  Q
    |||||||  ||||||||||||||||||||||||||||  ||||||||    
T  2951366 actagactttccacccgtgctgccgcacgggtcatatacattgtaaa 2951412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 31018198 - 31018236
Alignment:
Q  17 acactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  31018198 acactagactttccacccgtgctgccgcacgggtcatat 31018236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 52957107 - 52957069
Alignment:
Q  17 acactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  52957107 acactagactctccacccgtgctgccgcacgggtcatat 52957069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 4266610 - 4266574
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  4266610 actagactttccacccgtgctgccgcacgggtcatat 4266574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 4325454 - 4325490
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||| | ||||||||||||||||||||||||||    
T  4325454 actagaccttgcacccgtgctgccgcacgggtcatat 4325490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 9216260 - 9216224
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  9216260 actagactttccacccgtgctgccgcacgggtcatat 9216224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 18855233 - 18855269
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18855233 actagactttccacccgtgctgccgcacgggtcatat 18855269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 28546769 - 28546797
Alignment:
Q  157 ggtagattgcggaaaatctccttgtaaac 185  Q
    |||||||||||||||||||||||||||||    
T  28546769 ggtagattgcggaaaatctccttgtaaac 28546797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 28947454 - 28947490
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||| | ||||||||||||||||||||||||||||    
T  28947454 actagatcgtccacccgtgctgccgcacgggtcatat 28947490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 29942247 - 29942211
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  29942247 actagactttccacccgtgctgccgcacgggtcatat 29942211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 34888686 - 34888722
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  34888686 actagactttccacccgtgctgccgcacgggtcatat 34888722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 38913747 - 38913783
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  38913747 actagactttccacccgtgctgccgcacgggtcatat 38913783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1234 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 1091 - 1047
Alignment:
Q  11 atattaacactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||    
T  1091 atattaaaactagaccttgcacccgtgctgccgcacgggtcatat 1047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 11828 - 11792
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    ||||||||||||||||||||||||||||| |||||||    
T  11828 actagaccatccacccgtgctgccgcacgtgtcatat 11792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 18997929 - 18997893
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    ||||||| |||||||||||||||||||||||||||||    
T  18997929 actagactatccacccgtgctgccgcacgggtcatat 18997893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 405354 - 405399
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaa 64  Q
    |||||| | ||||||||||||||||||||||||||||  |||||||    
T  405354 actagatcgtccacccgtgctgccgcacgggtcatatacattgtaa 405399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 1598513 - 1598546
Alignment:
Q  146 gaccttaaatcggtagattgcggaaaatctcctt 179  Q
    |||||||||| |||||||||||||||||||||||    
T  1598513 gaccttaaattggtagattgcggaaaatctcctt 1598546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 995815 - 995851
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  995815 actagactttccacccgtgctgccgcacgggtcatat 995851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 5769490 - 5769526
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||| | ||||||||||||||||||||||||||    
T  5769490 actagaccttgcacccgtgctgccgcacgggtcatat 5769526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 6299020 - 6299056
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6299020 actagactttccacccgtgctgccgcacgggtcatat 6299056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 10478166 - 10478130
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  10478166 actagactttccacccgtgctgccgcacgggtcatat 10478130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 11071961 - 11071997
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||| | ||||||||||||||||||||||||||    
T  11071961 actagaccttgcacccgtgctgccgcacgggtcatat 11071997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 11145412 - 11145372
Alignment:
Q  26 catccacccgtgctgccgcacgggtcatatcgattgtaaac 66  Q
    ||||||||||||||| |||||||||||| ||||||| ||||    
T  11145412 catccacccgtgctgtcgcacgggtcatttcgattggaaac 11145372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 15961361 - 15961325
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  15961361 actagactttccacccgtgctgccgcacgggtcatat 15961325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 18175610 - 18175574
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18175610 actagactttccacccgtgctgccgcacgggtcatat 18175574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 23353622 - 23353658
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23353622 actagactttccacccgtgctgccgcacgggtcatat 23353658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 24471908 - 24471872
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||| | ||||||||||||||||||||||||||    
T  24471908 actagaccttgcacccgtgctgccgcacgggtcatat 24471872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 30473884 - 30473920
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  30473884 actagactttccacccgtgctgccgcacgggtcatat 30473920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 32110861 - 32110897
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  32110861 actagactttccacccgtgctgccgcacgggtcatat 32110897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 20655043 - 20655085
Alignment:
Q  13 attaacactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    ||||| |||||||  ||||||||||||||||||||||||||||    
T  20655043 attaatactagactttccacccgtgctgccgcacgggtcatat 20655085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 4082629 - 4082592
Alignment:
Q  18 cactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  4082629 cactagatcgtccacccgtgctgccgcacgggtcatat 4082592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 2398942 - 2398978
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  2398942 actagactttccacccgtgctgccgcacgggtcatat 2398978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 10729442 - 10729478
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  10729442 actagactttccacccgtgctgccgcacgggtcatat 10729478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 16349715 - 16349751
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||| | ||||||||||||||||||||||||||||    
T  16349715 actagatcgtccacccgtgctgccgcacgggtcatat 16349751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 16526306 - 16526342
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  16526306 actagactttccacccgtgctgccgcacgggtcatat 16526342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 17373161 - 17373197
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  17373161 actagactttccacccgtgctgccgcacgggtcatat 17373197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 20874917 - 20874881
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  20874917 actagactttccacccgtgctgccgcacgggtcatat 20874881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 25099236 - 25099272
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||| | ||||||||||||||||||||||||||||    
T  25099236 actagatcgtccacccgtgctgccgcacgggtcatat 25099272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 25158326 - 25158362
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||| | ||||||||||||||||||||||||||||    
T  25158326 actagatcgtccacccgtgctgccgcacgggtcatat 25158362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 34107338 - 34107374
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  34107338 actagactttccacccgtgctgccgcacgggtcatat 34107374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 34110881 - 34110845
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  34110881 actagactttccacccgtgctgccgcacgggtcatat 34110845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 37713652 - 37713688
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  37713652 actagaccatccacccgtgctgtcgcccgggtcatat 37713688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 37714048 - 37714076
Alignment:
Q  157 ggtagattgcggaaaatctccttgtaaac 185  Q
    |||||||||||||||||||||||||||||    
T  37714048 ggtagattgcggaaaatctccttgtaaac 37714076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 38246865 - 38246901
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  38246865 actagactttccacccgtgctgccgcacgggtcatat 38246901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 40177270 - 40177234
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40177270 actagactttccacccgtgctgccgcacgggtcatat 40177234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 37590802 - 37590840
Alignment:
Q  17 acactagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  37590802 acactagactttccacccgtgctgccgcacgggtcatat 37590840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 23976706 - 23976751
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaa 64  Q
    |||||| | ||||||||||||||||||||||||||||  |||||||    
T  23976706 actagatcgtccacccgtgctgccgcacgggtcatatatattgtaa 23976751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 8371080 - 8371116
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||| | ||||||||||||||||||||||||||    
T  8371080 actagaccttgcacccgtgctgccgcacgggtcatat 8371116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 12090459 - 12090495
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  12090459 actagactttccacccgtgctgccgcacgggtcatat 12090495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 16904952 - 16904988
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  16904952 actagactttccacccgtgctgccgcacgggtcatat 16904988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 18209740 - 18209704
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18209740 actagactttccacccgtgctgccgcacgggtcatat 18209704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 23143178 - 23143222
Alignment:
Q  10 catattaacactagaccatccacccgtgctgccgcacgggtcata 54  Q
    |||||||  |||||||| | |||||||||||||||||||||||||    
T  23143178 catattacaactagaccttgcacccgtgctgccgcacgggtcata 23143222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 27707361 - 27707401
Alignment:
Q  26 catccacccgtgctgccgcacgggtcatatcgattgtaaac 66  Q
    |||||||||||||| |||||||||||||||| |||| ||||    
T  27707361 catccacccgtgctaccgcacgggtcatatctattggaaac 27707401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 30824922 - 30824958
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  30824922 actagactttccacccgtgctgccgcacgggtcatat 30824958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 31965969 - 31966005
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  31965969 actagactttccacccgtgctgccgcacgggtcatat 31966005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 33139471 - 33139507
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  33139471 actagactttccacccgtgctgccgcacgggtcatat 33139507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 37651895 - 37651859
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  37651895 actagactttccacccgtgctgccgcacgggtcatat 37651859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 44376079 - 44376115
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||| | ||||||||||||||||||||||||||||    
T  44376079 actagatcgtccacccgtgctgccgcacgggtcatat 44376115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 52434853 - 52434817
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  52434853 actagactttccacccgtgctgccgcacgggtcatat 52434817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 1146 - 1101
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatatcgattgtaa 64  Q
    |||||| | ||||||||||||||||||||||||||||  |||||||    
T  1146 actagatcgtccacccgtgctgccgcacgggtcatatacattgtaa 1101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 46503 - 46467
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  46503 actagactttccacccgtgctgccgcacgggtcatat 46467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 149050 - 149086
Alignment:
Q  19 actagaccatccacccgtgctgccgcacgggtcatat 55  Q
    |||||||  ||||||||||||||||||||||||||||    
T  149050 actagactttccacccgtgctgccgcacgggtcatat 149086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University