View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1366_low_5 (Length: 420)
Name: NF1366_low_5
Description: NF1366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1366_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 21097073 - 21097400
Alignment:
| Q |
1 |
cttgacctcaacaagaccatcatttggatggcgaatcgcgaccaaccggttaacggaaaacgaaccaaactttcccttttaaacacaggaaacattgcat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21097073 |
cttgacctcaacaagaccatcatttggatggcgaatcgcgaccaaccggttaacggaaaacgaaccaaactttcccttttaaacacaggaaacattgtat |
21097172 |
T |
|
| Q |
101 |
tgcttgatgtttcattaaacaatgtttggtcttcaaacactgcatcattgaaaccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtga |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21097173 |
tgcttgatgtttcattaaacaatgtttggtcttcaaacactgcatcattgaaaccattagaattgcatctcaaaaatgatggaaatcttgtgttgcgtga |
21097272 |
T |
|
| Q |
201 |
gcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttca |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21097273 |
gcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttca |
21097372 |
T |
|
| Q |
301 |
ataagtgagagtaatcattcttctggct |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
21097373 |
ataagtgagagtaatcattcttctggct |
21097400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 328
Target Start/End: Original strand, 21106696 - 21107019
Alignment:
| Q |
5 |
acctcaacaagaccatcatttggatggcgaatcgcgaccaaccggttaacggaaaacgaaccaaactttcccttttaaacacaggaaacattgcattgct |
104 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||| || || ||||||||| |||||||| ||||||||||||| ||||| |||| |||| | |
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| T |
21106696 |
acctcaacaaaaccattatttggatggcaaatcgcgaccaacccgtgaatggaaaacgatccaaacttacccttttaaacactggaaatattgtattgtt |
21106795 |
T |
|
| Q |
105 |
tgatgtttcattaaacaatgtttggtcttcaaacactgcatcattgaaaccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagctt |
204 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21106796 |
tgatgtttctttaaacaatgttaggtcttcaaacacagcatcattgaaaccactagagttgcatctcaaagatgatggaaatcttgtgttgcgtgagctt |
21106895 |
T |
|
| Q |
205 |
caaggaatcaacattttgtggcagagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataa |
304 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
21106896 |
caaggaatcacaattttgtggcagagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtagcttcaagaa |
21106995 |
T |
|
| Q |
305 |
gtgagagtaatcattcttctggct |
328 |
Q |
| |
|
||||||||||||||||| |||||| |
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|
| T |
21106996 |
gtgagagtaatcattctactggct |
21107019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 328
Target Start/End: Complemental strand, 21131983 - 21131812
Alignment:
| Q |
157 |
ttagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactctcc |
256 |
Q |
| |
|
||||||||| |||||||| | ||||| ||||||||||| |||||||||||||||| | |||||||||||| || | ||| | ||||| ||||||||| |
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|
| T |
21131983 |
ttagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaagtaccattttgtggcaaagctatgatttcccaaccaatactctcc |
21131884 |
T |
|
| Q |
257 |
ttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggct |
328 |
Q |
| |
|
|||| |||||| || || ||||| ||||| ||||| ||||||| ||| ||||||||||||||||||||| |
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|
| T |
21131883 |
ttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaagccagagtaatcattcttctggct |
21131812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 155 - 328
Target Start/End: Complemental strand, 18660147 - 18659974
Alignment:
| Q |
155 |
cattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactct |
254 |
Q |
| |
|
||||||||||| |||||||| | ||||| |||||||| || |||||||||||||||| | ||| |||||||| || | ||| | |||||| ||||||| |
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|
| T |
18660147 |
cattagagttgtatctcaaagaagatggtaatcttgtattacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaacaaatactct |
18660048 |
T |
|
| Q |
255 |
ccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggct |
328 |
Q |
| |
|
|||||| ||||||||| || ||||| | ||| ||||| ||||||| ||| | ||||||||||||||||||| |
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| T |
18660047 |
ccttcctaatcaacctctcactagatacataaaacttgtttcttcaaaaagccaaagtaatcattcttctggct |
18659974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 328
Target Start/End: Complemental strand, 21113026 - 21112852
Alignment:
| Q |
154 |
ccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactc |
253 |
Q |
| |
|
|||||||||||| |||| | | | ||||| ||||||||||| ||||||||||||||| | ||| |||||||| || | ||| | || ||| |||||| |
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|
| T |
21113026 |
ccattagagttgtatcttagagaagatgggaatcttgtgttacgtgagcttcaaggacctaccatcttgtggcaaagctatgatttcccgacaaatactc |
21112927 |
T |
|
| Q |
254 |
tccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggct |
328 |
Q |
| |
|
||||||| ||||||||| || ||||||||||| ||||| ||||||| ||| | ||||||||||||||||||| |
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| T |
21112926 |
tccttcctaatcaacctctcactagatatacaaaccttgtttcttcaagaagccatagtaatcattcttctggct |
21112852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 328
Target Start/End: Complemental strand, 21124423 - 21124246
Alignment:
| Q |
154 |
ccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactc |
253 |
Q |
| |
|
|||||||||||| |||||||| | ||||| ||||||||||| |||||||||||| ||| | ||||||| || | || | ||| | |||||| || ||| |
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|
| T |
21124423 |
ccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaagaactaccattttgggggaaagctatgatttcccaacaaattctc |
21124324 |
T |
|
| Q |
254 |
tccttccaggtcaacctcttacaag---atatacaaagcttgtatcttcaataagtgagagtaatcattcttctggct |
328 |
Q |
| |
|
||||||| ||||||||| || || ||| ||||| ||| | ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
21124323 |
tccttcctaatcaacctctcactagataatacacaaaacttatttcttcaagaagccagagtaatcattcttctggct |
21124246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 328
Target Start/End: Original strand, 39130721 - 39130924
Alignment:
| Q |
125 |
tttggtcttcaaacactgcatcattgaaaccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtg |
224 |
Q |
| |
|
|||||||||||||||| | |||| | ||| |||||||| |||| ||| | ||||| ||||||||||| |||||||||||||| | | || ||||| |
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|
| T |
39130721 |
tttggtcttcaaacacagaatcaaacactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtg |
39130820 |
T |
|
| Q |
225 |
gcagagttttgactctccaacagatactctccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttct |
324 |
Q |
| |
|
||| || | ||| | ||||||| ||||||||||||| ||||||||| || ||||| ||||| |||| || |||| |||| ||||||||||||||||| |
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|
| T |
39130821 |
gcaaagctatgattttccaacaaatactctccttcctaatcaacctctcactagatacacaaaacttggttcctcaagaagtcagagtaatcattcttct |
39130920 |
T |
|
| Q |
325 |
ggct |
328 |
Q |
| |
|
|||| |
|
|
| T |
39130921 |
ggct |
39130924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 26745598 - 26745558
Alignment:
| Q |
220 |
ttgtggcagagttttgactctccaacagatactctccttcc |
260 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
26745598 |
ttgtggcagagttttgattccccaacagatactctccttcc |
26745558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 26738570 - 26738526
Alignment:
| Q |
216 |
cattttgtggcagagttttgactctccaacagatactctccttcc |
260 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||| |||||||| |
|
|
| T |
26738570 |
cattttgtggcaaagttttgattttccaacagataccctccttcc |
26738526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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