View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1366_low_6 (Length: 410)
Name: NF1366_low_6
Description: NF1366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1366_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 2357913 - 2357540
Alignment:
| Q |
1 |
aaacattatggtctgtttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacg |
100 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
2357913 |
aaacattatggtctgtttggattttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttacaattttcggtaaactcacg |
2357814 |
T |
|
| Q |
101 |
aggtgcagagagaggaccagctggatataatcttagccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttac |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
2357813 |
aggtgcagagagaggaccaactggatataatcttag-------ggtttctttgattatcgcttgaaggtacaccaacttgtttatatccgactttgttac |
2357721 |
T |
|
| Q |
201 |
acatttatctcttccaacgtggaagtcaagttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2357720 |
acatttatctcttccaacgtggaagtcaagttctgcttttgctttttccaatgtatgaggatttttcagtaacaaacatattgcccaagtaagggtaata |
2357621 |
T |
|
| Q |
301 |
gcacttgtgtcaattcctcctgcaattagtgactgtaaatgaagtgaaaattttataaaaatgtgtataagagtaagttta |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2357620 |
gcacttgtgtcaattcctcctgcaattagtgactgtaaatgaagtgaaaattttataaaaatgtgtataagagtaagttta |
2357540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 345
Target Start/End: Complemental strand, 2363208 - 2362891
Alignment:
| Q |
21 |
atcttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagaggaccag |
120 |
Q |
| |
|
|||||||||||||| || |||| ||| ||||| ||| | |||||||| ||||||| || ||||| | | || |||||||| |||| | ||| |||| |
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| T |
2363208 |
atcttccaaagattcaaaattaatcgtgttccatttcttacatcatatccacctaaattacaattctctgagaattcacgaggcacagataaagggccag |
2363109 |
T |
|
| Q |
121 |
ctggatataatcttagccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgt |
220 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||||||||||||||||| | |||||| |||||| ||||||| | ||| ||||||| | |
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|
| T |
2363108 |
gtggatataatcttagt-------gtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaactt |
2363016 |
T |
|
| Q |
221 |
ggaagtcaagttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcc |
320 |
Q |
| |
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| ||||||||| |||||||||||| |||| | |||||||| | | ||||||||||||||||| |||||||||| | |||| ||||||||||| |
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| T |
2363015 |
gagcatcaagttcttcttttgcttttttcaatattagaggatttctaagcaacaaacatattgcccatgtaagggtaacgctagttgtttcaattcctcc |
2362916 |
T |
|
| Q |
321 |
tgcaattagtgactgtaaatgaagt |
345 |
Q |
| |
|
| ||||||| ||||||| ||||| |
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|
| T |
2362915 |
cccgattagtgtctgtaaaagaagt |
2362891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 2351583 - 2351285
Alignment:
| Q |
15 |
gtttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagag |
114 |
Q |
| |
|
||||| |||||||||||||||| |||| |||||||||||| | |||| |||||||| || ||||||| | | || ||||||||||| | ||||| |
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|
| T |
2351583 |
gtttgaatcttccaaagatttagcattaaccgagttccttttctaacatggtaaccaccaatagtgcaattctctgagaattcacgaggtgcggcgagag |
2351484 |
T |
|
| Q |
115 |
gaccagctggatataatcttagccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttc |
214 |
Q |
| |
|
|||| | ||||| |||||||| ||||||||| | ||| |||||||||| ||||||||| |||||||||| ||||| | ||| | | |
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|
| T |
2351483 |
gacctggtggatgcaatcttag-------ggtttcttttactatagcttgaaggtataccaacttaccaatatccgactcgtttacaagcctttctttgc |
2351391 |
T |
|
| Q |
215 |
caacgtggaagtcaagttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaat |
314 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||| | ||||||||||||||| |||||||||||||| ||||| |||| | |||||||||| | |
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|
| T |
2351390 |
caacgtgagtgtcaagttcttcttttgcttttttcaatacaagaggatttttcaatagtaaacatattgcccatgtaagagtaacactacttgtgtcact |
2351291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 298
Target Start/End: Complemental strand, 2368879 - 2368684
Alignment:
| Q |
96 |
tcacgaggtgcagagagaggaccagctggatataatcttagccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgacttt |
195 |
Q |
| |
|
||||||||||| || | ||| |||||||||||||||||||| ||||||||||| || ||||||| ||||||||||| | ||| || | || | |
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|
| T |
2368879 |
tcacgaggtgccgataaagggccagctggatataatcttag-------ggtttctttgacaatggcttgaagatacaccaacttgtctatgtctgtctct |
2368787 |
T |
|
| Q |
196 |
gttacacatttatctcttccaacgtggaagtcaagttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaaggg |
295 |
Q |
| |
|
||||||| | ||| ||||||| || ||||||||| ||||||||||||||||| | |||||||| | | |||||||||||||||||| ||||||| |
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|
| T |
2368786 |
cttacacacctctcttttccaacttgagtatcaagttcttcttttgctttttccaatattagaggatttctaagtaacaaacatattgcccatgtaaggg |
2368687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 2340133 - 2339832
Alignment:
| Q |
12 |
tctgtttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagaga |
111 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||||||| ||||| || | ||||||||||| || ||||| || | || ||||| ||| | |||| |
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|
| T |
2340133 |
tctgtttgaatcttccaaagatttgtgattaatcgagttccctttataacttgataaccacctaaattacaattctttgagaattcacgtggtccggaga |
2340034 |
T |
|
| Q |
112 |
gaggaccagctggatataatcttagccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctc |
211 |
Q |
| |
|
||||||| | |||||| |||| |||| |||||||||| ||| |||||||||| | ||| ||||||||||| ||| ||| |||| | ||| |
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|
| T |
2340033 |
gaggacccggtggatacaatc-------ttagtgtttctttgactatagcttgaaggtatatcaatttatttatatcaaactcgcttaaacatctctctt |
2339941 |
T |
|
| Q |
212 |
ttccaacgtggaagtcaagttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtc |
311 |
Q |
| |
|
| ||||| || ||||||||| ||||||| ||||||| | | ||||||| ||||| | |||||||| |||||| |||||||| | | ||||||||| |
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|
| T |
2339940 |
tgccaacttgagcatcaagttcttcttttgccttttccattacaagaggattattcaaaagcaaacatagtgcccatgtaagggtgacactacttgtgtc |
2339841 |
T |
|
| Q |
312 |
aattcctcc |
320 |
Q |
| |
|
| ||||||| |
|
|
| T |
2339840 |
acttcctcc |
2339832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 2307242 - 2307175
Alignment:
| Q |
229 |
agttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggt |
296 |
Q |
| |
|
|||||| ||||||||||||||| | | ||||||| ||||||| |||||||| |||||| |||||||| |
|
|
| T |
2307242 |
agttcttcttttgctttttccattacaagaggattgttcaatagcaaacatagtgcccatgtaagggt |
2307175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 4305909 - 4305589
Alignment:
| Q |
18 |
tggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagaggac |
117 |
Q |
| |
|
||||||||||| ||||| | |||||||| |||||||||| |||||||||||||||||| || | || | || |||||||| ||| | |||||||| |
|
|
| T |
4305909 |
tggatcttccatagattcatgattagtctagttccttttttgacatcataaccacctaaatttgagttctctgtgaactcacgtggtcctgagagagggg |
4305810 |
T |
|
| Q |
118 |
cagctggatataatcttagccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaa |
217 |
Q |
| |
|
| | |||| |||| ||||| ||||||||||| |||| |||||||||| |||||||| | ||||||||||| | ||||||| | ||| | |||| |
|
|
| T |
4305809 |
cgggtggacataaccttag-------ggtttctttgactatcgcttgaaggtataccaacttgtctatatccgactcttttacacacctctctttgccaa |
4305717 |
T |
|
| Q |
218 |
cgtggaagtcaagttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcc |
317 |
Q |
| |
|
| |||| |||||||||| ||| ||||||||| | | | ||||||||| || ||||||||| |||||||| ||||||| | | | ||||||||| ||| |
|
|
| T |
4305716 |
cttggatgtcaagttcttcttgtgctttttctattacaagaggattttccagtaacaaacacattgcccatataagggtgacactagttgtgtcaactcc |
4305617 |
T |
|
| Q |
318 |
tcctgcaattagtgactgtaaatgaagt |
345 |
Q |
| |
|
||||||||| |||| || |||| ||||| |
|
|
| T |
4305616 |
tcctgcaatcagtgtctttaaacgaagt |
4305589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 5804351 - 5804414
Alignment:
| Q |
12 |
tctgtttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccaccta |
75 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
5804351 |
tctgtttggatcttccaaagatttgtgattaatcgagttccttttgtaacatgataaccaccta |
5804414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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