View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1366_low_8 (Length: 336)

Name: NF1366_low_8
Description: NF1366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1366_low_8
NF1366_low_8
[»] chr3 (1 HSPs)
chr3 (13-308)||(26925129-26925424)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 26925424 - 26925129
Alignment:
Q  13 aatatataaaaaagaacaacgtagaaaaactaatcaaaacttgtttgagtcttttgggattgtttgaaccgaggaaaaaggtatgaggttacttaggtat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26925424 aatatataaaaaagaacaacgtagaaaaactaatcaaaacttgtttgagtcttttgggattgtttgaaccgaggaaaaaggtatgaggttacttaggtat 26925325  T
Q  113 atatagcaccaaccatactcataatgtaaatgaagtattcaattaaataataattgtgatgtgatgttctagttaataattaaggaactatatgtggatt 212  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26925324 atatagcaccaaccatactcataatgtaaatgaagggttcaattaaataataattgtgatgtgatgttctagttaataattaaggaactatatgtggatt 26925225  T
Q  213 tgaatttgaattgacaaaattgtcctttgaagtggggtgtctttcaatttatgtggtttgaattttcacatggtggggtgaggtggggttcattgt 308  Q
    ||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26925224 tgaatttgaattgacaaaattgtcctttgaagtagggtatatttcaatttatgtggtttgaattttcacatggtggggtgaggtggggttcattgt 26925129  T

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