View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1367-INSERTION-2 (Length: 533)
Name: NF1367-INSERTION-2
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1367-INSERTION-2 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 11562356 - 11562646
Alignment:
| Q |
7 |
acatccatatcctaaaagttcatgtttcatatggtcttgtttgtcaactgtgaccagacaaaccttgctatctttaattagttctactaagttgaaaaga |
106 |
Q |
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| T |
11562356 |
acatccatatcctaaaagttcatgtttcatatggtcttgtttgtcaactgtgaccagacaaaccttgccatctttaattagttctactaagttgaaaaga |
11562455 |
T |
|
| Q |
107 |
ttaaggtggttcaaaagacaaaaagctaaaatctctgcgagaaattccttgttctgttgaaatccatttctgtcaagtggcttcacggtaacaacctgcg |
206 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11562456 |
ttagggtggttcaaaagacaaaaagctaaaaactctgcgagaaattccttgttctgttgaaatccatttctgtcaagtggcttcacggtaacaacctgcg |
11562555 |
T |
|
| Q |
207 |
tctgcgttgccagcaatgtaacacaacacttagttagggtgttactcacaatcttaatgaataggctttttctttaacatgtattaaaaag |
297 |
Q |
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| T |
11562556 |
tctgcgttgccagcaatgtaacacaacacttagttagggtgttactcacaatcttaatgaataggctttttctttaacatgtattaaaaag |
11562646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 11546180 - 11545903
Alignment:
| Q |
19 |
taaaagttcatgtttcatatggtcttgtttgtcaactgtgaccagacaaaccttgctatctttaattagttctactaagttgaaaagattaaggtggttc |
118 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
11546180 |
taaaagttcataattcatatggtcttgtt-gtcaactgtgaccggacaaaccttgccatctttaattaattctactaagttgaaaagattaaggtggtgc |
11546082 |
T |
|
| Q |
119 |
aaaagacaaaaagctaaaatctctgcgagaaattccttgttctgttgaaatccatttctgtcaagtggcttcacggtaacaacctgcgtctgcgttgcca |
218 |
Q |
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| T |
11546081 |
aaaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaatccatttctgtcaagtggcttcaccgtaacaacctgcgtctgcgttgcct |
11545982 |
T |
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| Q |
219 |
gcaatgtaacacaacacttagttagggtgttactcacaatcttaatgaataggctttttctttaacatgtattaaaaag |
297 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11545981 |
gcaatgtaacacagcacttagttagggtgttactcacaatcttaatgaataggctttttctttaacatgtattaaaaag |
11545903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 11550877 - 11550604
Alignment:
| Q |
12 |
catatcctaaaagttcatgtttcatatggtcttgtttgtcaactgtgaccagacaaaccttgctatctttaattagttctactaagttgaaaagattaag |
111 |
Q |
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||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| | |
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| T |
11550877 |
catatcctaaaagttcatgtttcatatagtcttgtt-gtcagctgtgaccagacaaacattgccatctttaattaattctactaagttgaaaagattagg |
11550779 |
T |
|
| Q |
112 |
gtggttcaaaagacaaaaagctaaaatctctgcgagaaattccttgttctgttgaaatccatttctgtcaagtggcttcacggtaacaacctgcgtctgc |
211 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
11550778 |
gtggttcaaaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaatccatttctgtcaagtggcttcagcgtaacaacctgcatctgc |
11550679 |
T |
|
| Q |
212 |
gttgccagcaatgtaacacaacacttagttagggtgttactcacaatcttaatgaataggctttttctttaacat |
286 |
Q |
| |
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|||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
11550678 |
gttgcctgcaatgtaacacagcacttacttagggtgttactcacaatcttaatgaatagcctttttccttaacat |
11550604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 305 - 533
Target Start/End: Original strand, 11563084 - 11563312
Alignment:
| Q |
305 |
gaagaaaaagcagaacaaagtaccaacattaatatgatataataaataacatagtaaaggagtataagaagtaagaaataagtaacatatgtaaacaatt |
404 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||| |
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| T |
11563084 |
gaagtaaaagcagaacaaagtaccaacattaatatgatataataaataacatagtaaaagggtataagaagtaagaaataagtaagatatgtaaacaatt |
11563183 |
T |
|
| Q |
405 |
ggtaaggtttttgttttatgagccaataatgttttcaactgagggcctaaccttttcgtcttcagttttgtatgcactatctcaagttggtcgattcttt |
504 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |
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| T |
11563184 |
ggtaaggtttttgttttatgagccaataatattttcaactgagggcctaaccttttcgtcttcagttttgtatgcactatttcgagttggttgattcttt |
11563283 |
T |
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| Q |
505 |
gttcaagttctgccatgctttcttcagat |
533 |
Q |
| |
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||||||||||||| ||||||||||||||| |
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| T |
11563284 |
gttcaagttctgctatgctttcttcagat |
11563312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 305 - 533
Target Start/End: Complemental strand, 11545477 - 11545251
Alignment:
| Q |
305 |
gaagaaaaagcagaacaaagtaccaacattaatatgatataataaataacatagtaaaggagtataagaagtaagaaataagtaacatatgtaaacaatt |
404 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| || | | |||||||| |||||||| |||| | |||||||||||| |
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| T |
11545477 |
gaagtaaaagcagaacaaagtaccaa-attaatatgatataataaataacataatagaagggtataagacgtaagaaacaagtgaatcatgtaaacaatt |
11545379 |
T |
|
| Q |
405 |
ggtaaggtttttgttttatgagccaataatgttttcaactgagggcctaaccttttcgtcttcagttttgtatgcactatctcaagttggtcgattcttt |
504 |
Q |
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|||||||||| ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || ||| |||||||| |
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| T |
11545378 |
tgtaaggttttagttttatgagccattattgttttcaactga-ggcctaaccttttcgtcttcagttttgtatgcgctatctcgagctggctgattcttt |
11545280 |
T |
|
| Q |
505 |
gttcaagttctgccatgctttcttcagat |
533 |
Q |
| |
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||||||| ||||| |||||| |||||||| |
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| T |
11545279 |
gttcaagatctgcaatgcttgcttcagat |
11545251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 305 - 533
Target Start/End: Complemental strand, 11550199 - 11549972
Alignment:
| Q |
305 |
gaagaaaaagcagaacaaagtaccaacattaatatgatataataaataacatagtaaaggagtataagaagtaagaaataagtaacatatgtaaacaatt |
404 |
Q |
| |
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|||| ||| |||||| ||||||||||||||| ||| ||||| |||||| | |||||| | ||||||||||||||||| |||| | |||||||||||| |
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| T |
11550199 |
gaagtaaaggcagaaaaaagtaccaacattattattatatatgaaataataaagtaaaagtgtataagaagtaagaaacaagtgaatcatgtaaacaatt |
11550100 |
T |
|
| Q |
405 |
ggtaaggtttttgttttatgagccaataatgttttcaactgagggcctaaccttttcgtcttcagttttgtatgcactatctcaagttggtcgattcttt |
504 |
Q |
| |
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|||||||||| | ||||||| |||| ||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||| | ||||| |||||||| |
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| T |
11550099 |
tgtaaggttttaggtttatgaaccaacaatattttcgactgagg-cctaaccttttcgtcttcagttttgtatgtgctatctcgatttggttgattcttt |
11550001 |
T |
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| Q |
505 |
gttcaagttctgccatgctttcttcagat |
533 |
Q |
| |
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||||||||| ||| ||||||||||||||| |
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| T |
11550000 |
gttcaagttttgctatgctttcttcagat |
11549972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 19860002 - 19859954
Alignment:
| Q |
219 |
gcaatgtaacacaacacttagttagggtgttactcacaatcttaatgaa |
267 |
Q |
| |
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|||||| ||||||| ||||||| ||| |||||||||||| ||||||||| |
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|
| T |
19860002 |
gcaatgcaacacaaaacttagtcaggatgttactcacaaccttaatgaa |
19859954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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