View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1367-INSERTION-3 (Length: 500)
Name: NF1367-INSERTION-3
Description: NF1367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1367-INSERTION-3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 8 - 500
Target Start/End: Original strand, 5017248 - 5017740
Alignment:
| Q |
8 |
gaatatgattaacagaacaagcaagacaaagttgaaccagatatggctcttgacagtaacagtagtagtaattcttcgcctgacaatgtgcctaactcaa |
107 |
Q |
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| T |
5017248 |
gaatatgattaacagaacaagcaagacaaagttgaaccagatatggctcttgacagcaacagtagtagtaattattcgcctgacaatgtgcctaactcaa |
5017347 |
T |
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| Q |
108 |
atcctcaacaaccatcaatgtttcagtggccttgttttcctcagactgccactcaagcaccatggcagcagcagttaccatatcctcaacaaggggctca |
207 |
Q |
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| T |
5017348 |
atcctcaacaaccatcaatgtttcattggccttgttttcctcagactgccactcaagcaccatggcagcagcagttaccatatcctcaacaaggggcgca |
5017447 |
T |
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| Q |
208 |
ggtatttcagccgactcagctgttcggagcaaccatccctcccatttttcagacattcaatggtaatggctggcaagcatttcctgttgcatcggaagct |
307 |
Q |
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| T |
5017448 |
ggtatttcagccgactcagctgttcggagcaaacatccctcccatttttcagacattcaatggtaatggctggcaagcatttcctgttgcatcggaagct |
5017547 |
T |
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| Q |
308 |
actaccacagcaacacataacttagttcctaatatgttctaccatgctggatacacatttcctggatttccaggtttgtatgcaactttttctcttcaga |
407 |
Q |
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| T |
5017548 |
actaccacagcaacacataacttagttcctaatatgttctaccatgctggatacacatttcccggatttccaggtttgtatgcaactttttctcttcaga |
5017647 |
T |
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| Q |
408 |
tgacttgtccttactgggatatccaggattgaacataatgatctatactgattgatatatcattttgtataaacttttaaaactcatttttag |
500 |
Q |
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| T |
5017648 |
tgacttgtccttactgggatttccaggattgaacataatgatctatactgattgatatatcattttgtataaactcttaaaactcatttttag |
5017740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 5005553 - 5005605
Alignment:
| Q |
233 |
ggagcaaccatccctcccatttttcagacattcaatggtaatggctggcaagc |
285 |
Q |
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| T |
5005553 |
ggagcaaatatccctcccatttttcagacattcaatgttaatggctggcaagc |
5005605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 413
Target Start/End: Original strand, 5005614 - 5005661
Alignment:
| Q |
366 |
ttcctggatttccaggtttgtatgcaactttttctcttcagatgactt |
413 |
Q |
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| T |
5005614 |
ttcctggctttccaggtatgtatggaactttttctcttcatatgactt |
5005661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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