View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13670_high_3 (Length: 226)
Name: NF13670_high_3
Description: NF13670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13670_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 2599407 - 2599210
Alignment:
| Q |
14 |
agaagaagagaccaatctgttttaagagacttccctgttagtagggacgagtcaatgcatatatgaatgttttttattgtaaccaaacccatgatagaca |
113 |
Q |
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| T |
2599407 |
agaagaagagaccaatctgatttaagagacttccctgttagtagggacgagtcaatgcatatatgaatgttttttattgtaaccaaacccgtgatagaca |
2599308 |
T |
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| Q |
114 |
tagaagtctatttggttcagatgatatccttgtaagtaggaacatcctagtaaatatccagaagttggctatgcttaaggtggtggagcatgttagtg |
211 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2599307 |
tagaagtctattcagttcagatgatatccttgtaagtaggaacatcctagtaaatatccagaagttggctatgcttaaggtggtggagcatgttagtg |
2599210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 2606103 - 2605930
Alignment:
| Q |
14 |
agaagaagagaccaatctgttttaagagacttccctgttagtagggacgagtcaatgcatatatgaatgtttt-ttattgtaaccaaacccatgatagac |
112 |
Q |
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||||||||||||||||||| |||||| ||||||||| |||||||||| |||||||||| ||||||||||||| ||| ||||||||||||| |||||||| |
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| T |
2606103 |
agaagaagagaccaatctgatttaagtgacttccctcttagtagggatgagtcaatgcctatatgaatgtttgattaatgtaaccaaacccgtgatagac |
2606004 |
T |
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| Q |
113 |
atagaagtctatttggttcagatgatatccttgtaagtaggaacatcctagtaaatatccagaagttggctatg |
186 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2606003 |
atagaagtctattcggttcagatgatatccttgtaagtaggaacatcctagtaaatatccagaagttggctatg |
2605930 |
T |
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