View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13670_low_1 (Length: 276)
Name: NF13670_low_1
Description: NF13670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13670_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 15376986 - 15376883
Alignment:
| Q |
1 |
gcaatgcaagagacgtgtgttgaatgaagatggagaaatgaatgtgacgggagagaaacgtgtaataataaggctaatgc-aagaagaatgatgaataat |
99 |
Q |
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| T |
15376986 |
gcaatgcaagagacgtgtgttgaatgaagatggagaaatgaatgtgacgggagagaaacgtgtaataataaggct-atgcaaagaagaatgatgaataat |
15376888 |
T |
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| Q |
100 |
tggag |
104 |
Q |
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||||| |
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| T |
15376887 |
tggag |
15376883 |
T |
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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 15376817 - 15376751
Alignment:
| Q |
170 |
aaggttaagctgatttttgtagtaagatagatgtagaagcaacaattgacttggtaggtccaaggac |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15376817 |
aaggttaagctgatttttgtagtaagatagatgtagaagcaacaattgacttggtagatccaaggac |
15376751 |
T |
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