View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13671_low_2 (Length: 339)
Name: NF13671_low_2
Description: NF13671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13671_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 40718095 - 40718405
Alignment:
| Q |
19 |
agttttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttcaaatggtagtgatgagggtaacatcataatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40718095 |
agttttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttcaaatggtagtgatgagggtaacatcataatt |
40718194 |
T |
|
| Q |
119 |
gattcaggtacaaccttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatccaa |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40718195 |
gattcaggtacaacgttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatccaa |
40718294 |
T |
|
| Q |
219 |
ctcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaaggtgcggatattaagttgcatcccat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40718295 |
ctcaacaattaaacctttgctatagtaccacatcagacatatataactttcctctaataacagcgcattttaaaggtgcggatattaagttgcatcccat |
40718394 |
T |
|
| Q |
319 |
tagtacctttg |
329 |
Q |
| |
|
||||||||||| |
|
|
| T |
40718395 |
tagtacctttg |
40718405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 14183338 - 14183648
Alignment:
| Q |
19 |
agttttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttcaaatggtagtgatgagggtaacatcataatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| || |||| ||||||||||||||| |
|
|
| T |
14183338 |
agttttctactatttgacattggaagcatttagtgttggtaacaaaagaatagaatttgaagggtcttcaaatggtggtcatgaaggtaacatcataatt |
14183437 |
T |
|
| Q |
119 |
gattcaggtacaaccttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatccaa |
218 |
Q |
| |
|
|||||||||||||| |||||| || | ||| || || |||||||||||||||||||||| ||| |||| |||||||| |||||||| ||||||||| |
|
|
| T |
14183438 |
gattcaggtacaacgttgacggttattccaactgatgtttataataatttggaatcagcggtgttggaattggtgaaactgaagcgtgttaatgatccaa |
14183537 |
T |
|
| Q |
219 |
ctcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaaggtgcggatattaagttgcatcccat |
318 |
Q |
| |
|
| | | ||| |||||||||||||| ||||||||| ||||| | |||||| ||||||| | |||||||||||||||||| ||||||||||||| || |
|
|
| T |
14183538 |
cccgattatttaacctttgctatagcgtcacatcagatggatatgattttcctataataacgacacattttaaaggtgcggatgttaagttgcatcctat |
14183637 |
T |
|
| Q |
319 |
tagtacctttg |
329 |
Q |
| |
|
|||||| |||| |
|
|
| T |
14183638 |
tagtacatttg |
14183648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 14192295 - 14192401
Alignment:
| Q |
26 |
tactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttcaaatggtagtgatgagggtaacatcataattgattcag |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||| ||||| |||| || | |||||||| | ||||||||||||||||||||||||| | |
|
|
| T |
14192295 |
tactatttgacattggaagcatttagtgttggaaatagaagagtagaaattggaggagttccaaatggtgataatgagggtaacatcataattgattcgg |
14192394 |
T |
|
| Q |
126 |
gtacaac |
132 |
Q |
| |
|
||||||| |
|
|
| T |
14192395 |
gtacaac |
14192401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 14201295 - 14201487
Alignment:
| Q |
26 |
tactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttcaaatggtagtgatgagggtaacatcataattgattcag |
125 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||||||| |||||||||||| || || || ||||| || ||||||||||||| |||||||||| | |
|
|
| T |
14201295 |
tactacttgacattagaagcatttagtgtgggaaacaaattaatagaatttggaggacctacatatggtggtaatgagggtaacattttaattgattctg |
14201394 |
T |
|
| Q |
126 |
gtacaaccttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatccaa |
218 |
Q |
| |
|
||||||| || || ||||||| | | || ||||| ||| || |||||||| || ||||||| | | || || |||| |||||| ||||||| |
|
|
| T |
14201395 |
gtacaacattcacatttttgccctatgatgtttattatagatttgaatcagctgtagcagaatatattaatctggagcatgttgaggatccaa |
14201487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 19649157 - 19648845
Alignment:
| Q |
16 |
tcaagttttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttcaaatggtagtgatgagggtaacatcata |
115 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | | || | ||| ||||| ||||||||||||||| |
|
|
| T |
19649157 |
tcaagctttctactatttgacgttagaagcatttagtgttggaaacaaaagaatagaatttg--aagtgtt-agatgacagtgaggagggtaacatcata |
19649061 |
T |
|
| Q |
116 |
attgattcaggtacaaccttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatc |
215 |
Q |
| |
|
||||||| |||||||| ||||| |||| || ||| || |||||| |||||||||||| || || ||| || ||||||||||| ||||||||||||| |
|
|
| T |
19649060 |
cttgattctggtacaacattgactcttttaccgtctcatgtttatactaatttggaatcggcggtagcacaactggtgaaactagatcgtgttgatgatc |
19648961 |
T |
|
| Q |
216 |
caactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaaggtgcggatattaagttgcatcc |
315 |
Q |
| |
|
| | ||||| |||||||||||| ||||||| |||||||||| |||| | |||||| |||| || || |||||||||||||| |||||||||||| | || |
|
|
| T |
19648960 |
ctaatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacattttaaaggtgcagatattaagttgaaccc |
19648861 |
T |
|
| Q |
316 |
cattagtacctttgct |
331 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19648860 |
aattagtacctttgct |
19648845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 34666086 - 34666398
Alignment:
| Q |
20 |
gttttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttc---aaatggtagtgatgagggtaacatcataa |
116 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| | ||||| | |||| |||||| ||||||||||||| |
|
|
| T |
34666086 |
gttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataa |
34666185 |
T |
|
| Q |
117 |
ttgattcaggtacaaccttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatcc |
216 |
Q |
| |
|
|||||||||||||||| ||||| || | || || | | |||| ||| ||||||||||| |||| || | ||||||||||| |||||||||||||| |
|
|
| T |
34666186 |
ttgattcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcc |
34666285 |
T |
|
| Q |
217 |
aactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaaggtgcggatattaagttgcatccc |
316 |
Q |
| |
|
| ||||||||| | ||| ||||||||| | |||| | |||| | |||||| |||| || || |||||||||||||| |||||| |||||||| | |
|
|
| T |
34666286 |
taatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatattgagttgcattct |
34666385 |
T |
|
| Q |
317 |
attagtacctttg |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34666386 |
attagtacctttg |
34666398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 34646392 - 34646704
Alignment:
| Q |
20 |
gttttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttc---aaatggtagtgatgagggtaacatcataa |
116 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| | ||||| | |||| |||||| ||||||||||||| |
|
|
| T |
34646392 |
gttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataa |
34646491 |
T |
|
| Q |
117 |
ttgattcaggtacaaccttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatcc |
216 |
Q |
| |
|
|||||||||||||||| ||||| || | || || | | |||| ||| ||||||||||| |||| || | ||||||||||| |||||||||||||| |
|
|
| T |
34646492 |
ttgattcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcc |
34646591 |
T |
|
| Q |
217 |
aactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaaggtgcggatattaagttgcatccc |
316 |
Q |
| |
|
| ||||||||| | ||| ||||||||| | |||| | |||| | |||||| |||| || | |||||||||||||| ||| || |||||||| | |
|
|
| T |
34646592 |
taatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgtacattttaaaggtgccgatgttgagttgcattct |
34646691 |
T |
|
| Q |
317 |
attagtacctttg |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34646692 |
attagtacctttg |
34646704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 31 - 328
Target Start/End: Original strand, 45645602 - 45645899
Alignment:
| Q |
31 |
tttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttcaaatggtagtgatgagggtaacatcataattgattcaggtaca |
130 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||| | |||||| | | | ||||||| |||||||| |||||||||||||||||| |
|
|
| T |
45645602 |
tttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgatgaaggtaacattataattgattcaggtaca |
45645701 |
T |
|
| Q |
131 |
accttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatccaactcaacaattaa |
230 |
Q |
| |
|
|| |||| | |||| ||| || | ||||||| |||||||||||||| |||| || | ||||||||| | ||||| |||||||| | ||| ||| |
|
|
| T |
45645702 |
acattgatggttttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaaacgtgtggatgatccttataaactattcg |
45645801 |
T |
|
| Q |
231 |
acctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaaggtgcggatattaagttgcatcccattagtaccttt |
328 |
Q |
| |
|
||| ||||||||| | |||| ||| |||| | ||||||||||| || || |||||||||||||| ||| || |||||||| | |||||||||||| |
|
|
| T |
45645802 |
gcctatgctatagtgcgacattagatgaatatgattttcctctaatcaccgcacattttaaaggtgctgatgttgagttgcattctattagtaccttt |
45645899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 1390492 - 1390655
Alignment:
| Q |
35 |
acattggaagcatttagtgttggaaacaaaagaatagaatttggcagatc-ttcaaatggtagtgatgagggtaacatcataattgattcaggtacaacc |
133 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| || | | ||||||||||||| ||| ||||||||| | ||||||||||||| | |
|
|
| T |
1390492 |
acattgaaagcatttagtgttggaaacaaaagagtagaattt-tcaaagcaatcaaatggtagtgttgatggtaacatcgtggttgattcaggtacggca |
1390590 |
T |
|
| Q |
134 |
ttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaact |
198 |
Q |
| |
|
|||| || | |||||| ||||||| |||||||| ||| ||| |||||| |||| || ||||| |
|
|
| T |
1390591 |
gtgacagttgtaccatctggtatttatcataatttgaaataagctgtggcaaaatcggttaaact |
1390655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 34303063 - 34303173
Alignment:
| Q |
21 |
ttttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttcaaatggtagtgatgagggtaacatcataattga |
120 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||| |||||||| ||||||||| | || ||||| ||| ||| || ||||||||||||||||| |
|
|
| T |
34303063 |
ttttctactatttgacaatagaagcatttagcgttggagacaaaagagtagaatttgcagggtcctcaaaaggtgttgaagaaggtaacatcataattga |
34303162 |
T |
|
| Q |
121 |
ttcaggtacaa |
131 |
Q |
| |
|
|||| |||||| |
|
|
| T |
34303163 |
ttcaagtacaa |
34303173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 33889265 - 33889226
Alignment:
| Q |
35 |
acattggaagcatttagtgttggaaacaaaagaatagaat |
74 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
33889265 |
acattggaagcatttagtgtgggaaacaatagaatagaat |
33889226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 33893731 - 33893770
Alignment:
| Q |
35 |
acattggaagcatttagtgttggaaacaaaagaatagaat |
74 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
33893731 |
acattggaagcatttagtgtgggaaacaatagaatagaat |
33893770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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