View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13671_low_3 (Length: 260)
Name: NF13671_low_3
Description: NF13671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13671_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 26463519 - 26463762
Alignment:
| Q |
1 |
ctcaataacaccatttttagcttcaagagaatcaggttcaaaataaaaaacctttagaaacacactcatggcttcttctctcattcccttccattcataa |
100 |
Q |
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| T |
26463519 |
ctcaataacaccattcttagcttcaagagaatcatgttcaaaatcaaaaacctttagaaacatactcatggcttcttctctcattcccttccattcataa |
26463618 |
T |
|
| Q |
101 |
cactttcaatgaatcaaaattaagacaaaactttcaataaatcaatgaaccacaattgactataacatcttgtgtgcgttgtttttgttgttcttgtcga |
200 |
Q |
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| T |
26463619 |
cactttcaatgaatcaaaattaagacaaaactttcaataaatcaatgaaccgcaattgactataacatcttgtgtgcgttgtttttgttgttcttgtcga |
26463718 |
T |
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| Q |
201 |
cggcgaaggtacgatggcgaaggtatgtacaagtatcaactagc |
244 |
Q |
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| T |
26463719 |
cggcgaaggtacgatggcgaaggtatgtacaagtatcaactagc |
26463762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 31197400 - 31197591
Alignment:
| Q |
1 |
ctcaataacaccatttttagcttcaagagaatcag---gttcaaaataaaaaacctttagaaacacactcatggcttcttctctcattcccttccattca |
97 |
Q |
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| T |
31197400 |
ctcaataacaccatttttagctttaagagaatcagcaggttcaaaatcaaaaacctttagaaacacactcatggcttcttctctcattcccttccattca |
31197499 |
T |
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| Q |
98 |
taacactttcaatgaatcaaaattaagacaaaactttcaataaatcaatgaaccacaattgactataacatcttgtgtgcgttgtttttgtt |
189 |
Q |
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| T |
31197500 |
taacactttcaatgaatcaaaattaagacaaaactttcaatgaatcaatgaaccgcaattgactataacatcttgtgtgcgttgtttttgtt |
31197591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 28537179 - 28537093
Alignment:
| Q |
19 |
agcttcaagagaatcaggttcaaaataaaaaacctttagaaacacactcatggcttcttctctcattcccttccattcataacactt |
105 |
Q |
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|||||||| ||||||||||||||||| | |||||| |||||||| || | |||||||||||||| || ||||||||||||||||| |
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| T |
28537179 |
agcttcaacagaatcaggttcaaaatccagaaccttctgaaacacattcttcgcttcttctctcatccctttccattcataacactt |
28537093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 29143844 - 29143806
Alignment:
| Q |
169 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
207 |
Q |
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| T |
29143844 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
29143806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 47558608 - 47558636
Alignment:
| Q |
169 |
cttgtgtgcgttgtttttgttgttcttgt |
197 |
Q |
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| T |
47558608 |
cttgtgtgcgttgtttttgttgttcttgt |
47558636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 55866928 - 55866966
Alignment:
| Q |
169 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
207 |
Q |
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| T |
55866928 |
cttgtgtgcgttgattttgttgttcttgtcgactgcgaa |
55866966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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