View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13671_low_5 (Length: 220)
Name: NF13671_low_5
Description: NF13671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13671_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 48592747 - 48592552
Alignment:
| Q |
21 |
caccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgtatgtccaaggccctctt |
120 |
Q |
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| T |
48592747 |
caccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgtatgtccaaggccctctt |
48592648 |
T |
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| Q |
121 |
tttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaaagccct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48592647 |
tttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatctgtgttacctcgcgaaccaaagccct |
48592552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 48602442 - 48602247
Alignment:
| Q |
21 |
caccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgtatgtccaaggccctctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48602442 |
caccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgtatgtccaaggccctctt |
48602343 |
T |
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| Q |
121 |
tttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaaagccct |
216 |
Q |
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| T |
48602342 |
tttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatctgtgttacctcgcgaaccaaagccct |
48602247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 23231585 - 23231780
Alignment:
| Q |
21 |
caccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgtatgtccaaggccctctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
23231585 |
caccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcatacctcttgtgtatgtccaaggccctttt |
23231684 |
T |
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| Q |
121 |
tttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaaagccct |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23231685 |
tttaaaaccttgcaagtcaaagttcttgaaaaatcctataaaatccgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaaagccct |
23231780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 23224265 - 23224441
Alignment:
| Q |
34 |
cttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgtatgtccaaggccctctttttaaaaccttgc |
133 |
Q |
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|||||||| ||||| | ||| ||||||||| |||| | ||| |||| |||||||||||||| || ||||| ||||| ||||||||||| | |||||| |
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| T |
23224265 |
cttggctttccttcgtgattcctcacgatcacaaattaacttctccagaaaagcatcatacctcttatgtatatccaatgccctctttttgagaccttga |
23224364 |
T |
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| Q |
134 |
aagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatttgtgttacctcgcgaaccaa |
210 |
Q |
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||||| ||||||||| ||| |||||||||||| |||| |||||||| || |||||||| || || || |||||||| |
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| T |
23224365 |
aagtccaagttcttgcaaaatcctataaaatccgaaatgttaaattccccgaaaatttgggtcacatctcgaaccaa |
23224441 |
T |
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