View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_high_19 (Length: 394)
Name: NF13672_high_19
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 7885922 - 7885556
Alignment:
| Q |
20 |
ccagctactccttccattgcaacacgaggactgaaactgaccaagccccaccaccacgaggaagaaactttgatcatgaacacctt-----attatgttt |
114 |
Q |
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| T |
7885922 |
ccagctacttcttccattgcaacacgaggactgaaactgaccaagccccaccaccaagaggaagaaactttgatcatgaacaccttcccttattatgttt |
7885823 |
T |
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| Q |
115 |
atttaatgttactcaccattgaaaatgcatgcattataatttttgtgtgtggcgaaaggcatcacatttttgcatactaacataacacaataattatgca |
214 |
Q |
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| T |
7885822 |
atttaatgttacacaccattgaaaatgcatgcattataatttttgtgtgtgacgaaaggcatcacatttttgcatactaacataacacaataattatgca |
7885723 |
T |
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| Q |
215 |
tataataaatgaagtcaaaactgagtaggtccatcagcatgctgtggataacgattagatttagaggatccacagtggataataaatatcagagaggaca |
314 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7885722 |
tataataagtgaagtcaaaactgagtaggtccatcagcatgctatggataacgattagatttagaggatccacagtggataataaatatcagagaggaca |
7885623 |
T |
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| Q |
315 |
tagtaaagatgcagcacgtgcaagttggaattttgtttcttttttgctggctccaacctttacatatt |
382 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
7885622 |
tagtaaagatgcagcacgtgcaagttggaa-tttgtttcttttttgctgcctccaacctttacatatt |
7885556 |
T |
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