View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13672_high_20 (Length: 371)
Name: NF13672_high_20
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 36243953 - 36244311
Alignment:
| Q |
1 |
accacccacatcaatttcacactaatcatcaaatagaaagttctgcaatttcttcaatggagaaaattcatgaacccatattctgca-ttttttccacag |
99 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
36243953 |
accacccacatcaatttcacagtaatcatcaaatagaaagttttgcaatttcttcaatggagaaaattcatgaacccatattctgcaatttttttcacag |
36244052 |
T |
|
| Q |
100 |
taatcatnnnnnnnnnnnnnnnncactcacccacattcatgaactcatactcaatcattgtcttttgtttcttcatgaatcttgtttctggtttcacagt |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36244053 |
taatcataaaacaaaataaaaaacactcacccacattcatgaacccatactcaatcattgtcttttgtttcttcatgaatcttgtttctggtttcacagt |
36244152 |
T |
|
| Q |
200 |
ttctgagaatttgtggaactcaaaattg-nnnnnnnnnnagatctgagattgagggtattattactgtgaagtgattaatttgaagttgtgggttttatt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
36244153 |
ttctgagaatttgtggaactcaaaattgattttttttttagatctgagattgagggtattattattgtgaagtgattaatttgaagttgtgggttttgtt |
36244252 |
T |
|
| Q |
299 |
gatttttgtgtaaagttaaga-nnnnnnnggattttggtatctgggttttgtttagaag |
356 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
36244253 |
gatttttgtgtaaagttaagattttttttggattttggtgtctgagttttgtttagaag |
36244311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 28050765 - 28051126
Alignment:
| Q |
1 |
accacccacatcaatttcacactaatcatcaaatagaaagttctgcaatttcttcaatggagaaaattcatgaacccatattctgcattttttccacagt |
100 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
28050765 |
accacccacatcaatttcaaagtaatcatcaaatagaaagttctgcaatttcttcaatggagaaaattcatgaacccatattccgcaattttttcacagt |
28050864 |
T |
|
| Q |
101 |
aatcatnnnnnnnnnnnnnnnncactcacccacattcatgaactcatactcaatcattgtcttttgtttcttcatgaatcttgtttctggtttcacagtt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28050865 |
aatcataaaacaaaataacaaacactcacccacattcatgaactcatactcaatcaatgtcttttgtttcttcatgaatcttgtttctggtttcatagtt |
28050964 |
T |
|
| Q |
201 |
tctgagaatttgtggaactcaaaattg------nnnnnnnnnnagatctgagattgagggtattattactgtgaagtgattaatttgaagttgtgggttt |
294 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28050965 |
tctgagaatttgtggaactcaaaattgattttttttttttttaagatctgagattgagggtattattattgtgaagtgattaatttgaagttgtgggttt |
28051064 |
T |
|
| Q |
295 |
tattgatttttgtgtaaagttaagannnnnnnggattttggtatctgggttttgtttagaag |
356 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28051065 |
tgttgatttttgtgtaaagttaagatttttttggattttggtatctgggttttgtttagaag |
28051126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 9803099 - 9803208
Alignment:
| Q |
150 |
tcaatcattgtcttttgtttcttcatgaatcttgtttctggtttcacagtttctgagaatttgtggaactcaaaattgnnnnnnnnnnagatctgagatt |
249 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||||||| |||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
9803099 |
tcaatcattgtcctttgtttcttcatgaatcttagttttggtttcattgtttctgagagtttttggaactcaaaattgaatttttttgagatctgagatt |
9803198 |
T |
|
| Q |
250 |
gagggtatta |
259 |
Q |
| |
|
|||||||||| |
|
|
| T |
9803199 |
gagggtatta |
9803208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 9803205 - 9803247
Alignment:
| Q |
273 |
attaatttgaagttgtgggttttattgatttttgtgtaaagtt |
315 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
9803205 |
attaatttgaagttctgggttttgttgatttttgtgtaaagtt |
9803247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University