View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_high_29 (Length: 258)
Name: NF13672_high_29
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3766989 - 3767228
Alignment:
| Q |
1 |
agtaagtttacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatagaatccttga |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3766989 |
agtaagtgtacttccattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttga |
3767088 |
T |
|
| Q |
101 |
gcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtgttagagtttaatgatggtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3767089 |
gcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtgttggagtttaatgatggtg |
3767188 |
T |
|
| Q |
201 |
gaataactacgatagaagtagggttttttccactcactat |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3767189 |
gaataactacgatagaagtagggttttttccactcactat |
3767228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 3755461 - 3755651
Alignment:
| Q |
1 |
agtaagtttacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatagaatccttga |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3755461 |
agtaagtgtacttccattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttga |
3755560 |
T |
|
| Q |
101 |
gcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtgttagagttta |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
3755561 |
gcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtggttgagttta |
3755651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3770752 - 3770840
Alignment:
| Q |
1 |
agtaagtttacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcat |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3770752 |
agtaagtttacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcat |
3770840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 3751602 - 3751767
Alignment:
| Q |
9 |
tacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttcc |
108 |
Q |
| |
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|||| |||||||||||||||||| | ||| |||| ||||||||||| || ||| ||| ||||||| |||||||||||||||| |||||||||||||| |
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| T |
3751602 |
tactaccattatactttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttcc |
3751701 |
T |
|
| Q |
109 |
aacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaa |
174 |
Q |
| |
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||||| ||||||| |||| |||||||||| ||| ||||||| || | |||| |||||||||||| |
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| T |
3751702 |
aacaagcttagaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaa |
3751767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 3745785 - 3745950
Alignment:
| Q |
9 |
tacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttcc |
108 |
Q |
| |
|
|||| |||||||||||||||||| | ||| ||||| |||||||||| | |||| || ||||| || ||||||||||||| || |||||||||||||| |
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| T |
3745785 |
tactcccattatactttccttcaatgaaagcaaaagtcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttcc |
3745884 |
T |
|
| Q |
109 |
aacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaa |
174 |
Q |
| |
|
||||| ||||||| ||| | |||||||||||||||||||||||| || ||| |||| ||||||| |
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|
| T |
3745885 |
aacaagcttagaactcatttttggtcctaaagttaaagggttgtcaataatgttgactaaaccaaa |
3745950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 3771304 - 3771399
Alignment:
| Q |
86 |
gcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtg |
181 |
Q |
| |
|
|||| ||| ||||||| ||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3771304 |
gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtg |
3771399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 3780975 - 3781126
Alignment:
| Q |
9 |
tacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttcc |
108 |
Q |
| |
|
|||| |||||||||||||||||| | ||| |||||||||| | ||| || ||| | | ||| |||| | |||||||||||||||||||||||| |||| |
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| T |
3780975 |
tactaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttcc |
3781074 |
T |
|
| Q |
109 |
aacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatg |
160 |
Q |
| |
|
||||| ||||||| ||| | |||||||||||||||||||||||| |||||| |
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|
| T |
3781075 |
aacaagcttagaactcagttctggtcctaaagttaaagggttgtcaatcatg |
3781126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 3762581 - 3762746
Alignment:
| Q |
9 |
tacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttcc |
108 |
Q |
| |
|
|||| |||||||||||||||||| | ||| ||||||||| | ||| || ||| | | ||| || | |||||||||||||||||||||||||| |||| |
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|
| T |
3762581 |
tactaccattatactttccttcaatgaaagcaaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttcc |
3762680 |
T |
|
| Q |
109 |
aacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaa |
174 |
Q |
| |
|
||||| |||||| ||| | ||||||||||| ||||||||||| |||||||||||| ||||||| |
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|
| T |
3762681 |
aacaagtttagaactcagttcgggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaa |
3762746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 3776662 - 3776827
Alignment:
| Q |
9 |
tacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttcc |
108 |
Q |
| |
|
|||| |||||||||||||||||| | ||| |||||||||| | ||| || ||| | | ||| || | | |||||||||||||||||||||||| | || |
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|
| T |
3776662 |
tactaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctacc |
3776761 |
T |
|
| Q |
109 |
aacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaa |
174 |
Q |
| |
|
||||| |||||| |||| | ||||||||||||||||||||||| ||||||| ||| ||||||| |
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|
| T |
3776762 |
aacaagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaaccaaa |
3776827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 25985461 - 25985357
Alignment:
| Q |
86 |
gcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtgttag |
185 |
Q |
| |
|
|||||||||||||| ||||||||||| | || ||| |||| || |||||||| ||||||||||| || |||||| ||| ||||||| |||||| | | |
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| T |
25985461 |
gcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaatcatgttaactaaaccaaaagcagtggttg |
25985362 |
T |
|
| Q |
186 |
agttt |
190 |
Q |
| |
|
||||| |
|
|
| T |
25985361 |
agttt |
25985357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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