View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13672_high_5 (Length: 579)

Name: NF13672_high_5
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13672_high_5
NF13672_high_5
[»] chr2 (41 HSPs)
chr2 (21-564)||(9294940-9295487)
chr2 (50-564)||(9284490-9285011)
chr2 (367-564)||(9315666-9315861)
chr2 (246-560)||(9061463-9061799)
chr2 (390-564)||(9328260-9328441)
chr2 (367-562)||(12012851-12013032)
chr2 (313-564)||(9320550-9320824)
chr2 (192-363)||(10352570-10352739)
chr2 (26-254)||(9068636-9068867)
chr2 (367-562)||(11987789-11987970)
chr2 (315-430)||(9291519-9291648)
chr2 (367-447)||(8573931-8574013)
chr2 (25-75)||(10371185-10371235)
chr2 (383-481)||(10371502-10371600)
chr2 (384-481)||(9272311-9272408)
chr2 (498-564)||(7115969-7116038)
chr2 (25-75)||(9287941-9287991)
chr2 (25-75)||(10351512-10351562)
chr2 (488-564)||(12006418-12006496)
chr2 (315-431)||(9274146-9274273)
chr2 (367-451)||(9364264-9364348)
chr2 (25-75)||(8574241-8574291)
chr2 (86-218)||(9061802-9061930)
chr2 (502-562)||(9274277-9274340)
chr2 (107-182)||(10335163-10335235)
chr2 (25-72)||(9061958-9062005)
chr2 (458-564)||(9291657-9291764)
chr2 (73-181)||(9326820-9326924)
chr2 (488-539)||(12019216-12019266)
chr2 (25-75)||(10340788-10340838)
chr2 (528-565)||(9065913-9065950)
chr2 (27-63)||(10347062-10347098)
chr2 (255-294)||(9364107-9364146)
chr2 (99-146)||(10340878-10340924)
chr2 (25-75)||(9273940-9273990)
chr2 (192-246)||(9364009-9364063)
chr2 (367-424)||(10352757-10352814)
chr2 (264-346)||(9066155-9066234)
chr2 (99-135)||(9274028-9274064)
chr2 (86-134)||(9315503-9315551)
chr2 (315-363)||(9315600-9315648)
[»] scaffold0667 (2 HSPs)
scaffold0667 (382-564)||(4107-4295)
scaffold0667 (73-182)||(1974-2079)
[»] chr1 (5 HSPs)
chr1 (392-517)||(29443650-29443774)
chr1 (367-517)||(29453633-29453780)
chr1 (316-410)||(29468228-29468329)
chr1 (367-451)||(29422960-29423043)
chr1 (95-147)||(29454036-29454087)
[»] chr3 (1 HSPs)
chr3 (247-481)||(37461982-37462232)
[»] chr8 (3 HSPs)
chr8 (382-517)||(41967070-41967202)
chr8 (25-75)||(41968174-41968224)
chr8 (314-363)||(41967235-41967284)
[»] chr4 (2 HSPs)
chr4 (100-146)||(26574416-26574461)
chr4 (367-424)||(26574543-26574600)


Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 21 - 564
Target Start/End: Complemental strand, 9295487 - 9294940
Alignment:
Q  21 ttacgcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaactttcttctgtttacatttcacaacagggtggaatagtctcaaca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9295487 ttacgcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaactttcttctgtttacatttcacaacagggtggaatagtctcaaca 9295388  T
Q  121 ttcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatggnnnnnnngcaattcataccaaaattctttctttaatc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  9295387 ttcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatggaaaaaaagcaattcataccaaaattctttctttaatc 9295288  T
Q  221 taatttaaaagaaaaggaatcctgcaaattctttagctagtcacaaggtcaattcttaaaccgaaacataacatgtattgcattttttcttggtttcttt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9295287 taatttaaaagaaaaggaatcctgcaaattctttagctagtcacaaggtcaattcttaaaccgaaacataacatgtattgcattttttcttggtttcttt 9295188  T
Q  321 tgaaatccagcatacacacattgtcacacatacataaacaaagagt-attagagaacccctgtcctataataagaattcaatttgacctttagcatagag 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9295187 tgaaatccagcatacacacattgtcacacatacataaacaaagagtaattagagaacccctgtcctataataagaattcaatttgacctttagcatagag 9295088  T
Q  420 tttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctct 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9295087 tttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctct 9294988  T
Q  520 tgcttgaacgattctccttc---ctagaattatcaacagggaaggaag 564  Q
    ||||| ||||||||||||||   |||||||||||||||||||||||||    
T  9294987 tgcttaaacgattctccttcttactagaattatcaacagggaaggaag 9294940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 50 - 564
Target Start/End: Complemental strand, 9285011 - 9284490
Alignment:
Q  50 tttggagtaatttcatggtaggccaactttcttctgtttacatttcacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataataa 149  Q
    |||| ||||||| ||| |||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |    
T  9285011 tttgaagtaattccattgtaggccaactttcttctcttt----ttcacaacagggtggaatagtctcaacattcagaaataagcgtgtacaaaataatta 9284916  T
Q  150 ttaattaggagtgaagatcataaacaatgaatggnnnnnnngcaattcataccaaaattctttctttaatctaatttaaaagaaaaggaatcctgcaaat 249  Q
    |||    ||||| ||||||||||||||| ||||        |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||    
T  9284915 tta----ggagt-aagatcataaacaataaatg-aaaaaaagcaattcataacaaaattcattctttaatctaatttaaaagaaaaggaatcctggaaat 9284822  T
Q  250 tctttagctagtcacaaggtcaattcttaaaccgaaacataacatgtattgcattttttcttggtttcttttgaaatccagcatacacacattgtcacac 349  Q
    ||||||||||||||||||||||| ||||||||||||||  | |||| |||  |||| ||| |   |||||||||||||||| |||||||| ||| || ||    
T  9284821 tctttagctagtcacaaggtcaactcttaaaccgaaaccgagcatgcattatatttcttcct---ttcttttgaaatccagtatacacactttgccaaac 9284725  T
Q  350 a----tacataaacaaag------------agta-ttagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataa 432  Q
    |    |||||| ||||||            |||| || ||||  || ||||| ||||||||||||||||||||||||||  ||| |||||||| ||||||    
T  9284724 acatatacatagacaaagtatagacatcaaagtaattggagactccttgtccgataataagaattcaatttgacctttaatataaagtttaactacataa 9284625  T
Q  433 attatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctcttgcttgaacgatt 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9284624 attatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctcttgcttaaacgatt 9284525  T
Q  533 ctccttc---ctagaattatcaacagggaaggaag 564  Q
    |||||||   |||||||||||||||||||||||||    
T  9284524 ctccttcttactagaattatcaacagggaaggaag 9284490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 367 - 564
Target Start/End: Original strand, 9315666 - 9315861
Alignment:
Q  367 attagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaact 466  Q
    ||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||| |||| | |||||||    
T  9315666 attagggaatccttgtcctataataagaattcaatttgacctttagcatagagtttaactacttatatcatatgatgggtccattgaactgacattaact 9315765  T
Q  467 tatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctcttgcttgaacgattctc---cttcctagaattatcaacagggaaggaa 563  Q
    |||||| |||||||| |||| |||||  ||||    ||||||||||||| ||||||||| | |||||||   ||||||| ||| ||||||||||||||||    
T  9315766 tatacatagcaaaaa-ctcaaataatatataa----gtaccttctcttgttcttgcttgtatgattctccttcttcctacaataatcaacagggaaggaa 9315860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 246 - 560
Target Start/End: Complemental strand, 9061799 - 9061463
Alignment:
Q  246 aaattctttagctagtcacaaggtcaattcttaaaccgaaacataacatgtattgc-attttttcttggtttcttttgaaatccagcatacacacattgt 344  Q
    |||||||||| |||||||||||||||| || |||||  ||||||| |||  | ||  |||  || || ||||||||||||||||||||||||||||||||    
T  9061799 aaattctttatctagtcacaaggtcaactcctaaactaaaacatagcatacaatgttattaattttttgtttcttttgaaatccagcatacacacattgt 9061700  T
Q  345 cacacatacataaacaaag----------agta-ttagagaacc-----cctgtcctataataagaattcaatttgacctttagcatagagtttaaccac 428  Q
    |||| ||||||||||||||          |||| |||||||| |     | |||||||||| ||||||||||||| ||||||||||||||||||||| ||    
T  9061699 cacatatacataaacaaaggtagattcaaagtaattagagaatcaaatccttgtcctataacaagaattcaatttaacctttagcatagagtttaactac 9061600  T
Q  429 ataaattatatgatgggtccattaaactaaaattaacttatacaaagc-----------aaaaaactcagataatcaataaagaagtaccttctcttgct 517  Q
    ||| ||||||||||||  ||||| |||| | || |||||||||| |||           |||||||||| |||||||||    ||||||||||||||| |    
T  9061599 atatattatatgatgg--ccattgaactgacatcaacttatacatagcaaaaactcaaaaaaaaactcatataatcaat----aagtaccttctcttggt 9061506  T
Q  518 cttgcttgaacgattctccttcctagaattatcaacagggaag 560  Q
    |||||||| ||||||||||||| || || ||||||||||||||    
T  9061505 cttgcttgtacgattctccttcttacaagtatcaacagggaag 9061463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 390 - 564
Target Start/End: Original strand, 9328260 - 9328441
Alignment:
Q  390 taagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactcagat 489  Q
    ||||||||||||||||||||||||||||||||||||  |||| || |||||| ||||||||| || | | || |||||||||| |||||||| |||| |     
T  9328260 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaa-ctcaaaa 9328358  T
Q  490 aa-tca--at--aaagaagtaccttctcttgctcttgcttgaacgattctc---cttcctagaattatcaacagggaaggaag 564  Q
    || |||  ||  ||||||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||||||||||    
T  9328359 aactcataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaag 9328441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 367 - 562
Target Start/End: Complemental strand, 12013032 - 12012851
Alignment:
Q  367 attagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaact 466  Q
    ||||||||| || |||||||||||||||||||||||||||||||| ||| |||| |||| ||||| || |||||||||||||||| || | | |||||||    
T  12013032 attagagaatccttgtcctataataagaattcaatttgacctttaacatggagtctaactacatatatcatatgatgggtccattgaattgatattaact 12012933  T
Q  467 tatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctcttgcttgaacgatt---ctccttcctagaattatcaacagggaagga 562  Q
    |||||                ||||||||| |||||||||||||||||||||||||||||| ||||   || |||||||||||||||||||||||||||    
T  12012932 tatac----------------ataatcaat-aagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaattatcaacagggaagga 12012851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 313 - 564
Target Start/End: Original strand, 9320550 - 9320824
Alignment:
Q  313 gtttcttttgaaatccagcatacacacattgtcacacatacataaacaaag-------------agt-attagagaacccctgtcctataataagaattc 398  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||             ||| ||||||| | || ||||| ||||||| |||||    
T  9320550 gtttcttttgaaatccagcatacacacattgtcacatatacgtaaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattc 9320649  T
Q  399 aatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaag--------caaaaaactcagata 490  Q
    |||||||||| ||||||||||||||||   ||| || |||||||||||||||| || | | || |||| ||||| ||        |||||||||   |||    
T  9320650 aatttgacctatagcatagagtttaacttaatatatcatatgatgggtccattgaattgacatcaactaatacatagcaaaaactcaaaaaactagtata 9320749  T
Q  491 atcaataaagaagtaccttctcttgctcttgcttgaacgattctc---cttcctagaattatcaacagggaaggaag 564  Q
    ||||  ||| |||||||||||| |||||||||||| |||||||||   |||| ||||||||||||||||||||||||    
T  9320750 atca--aaacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaag 9320824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 192 - 363
Target Start/End: Original strand, 10352570 - 10352739
Alignment:
Q  192 caattcataccaaaattctttctttaatctaatttaaaagaaaaggaatcctgcaaattctttagctagtcacaaggtcaattcttaaaccgaaacataa 291  Q
    ||||||||  ||||| |||||||| ||| |||||| ||||||||||||| |||||||||||||||| | |||||||||||| || |||| | | |||||     
T  10352570 caattcatttcaaaagtctttcttcaatgtaattttaaagaaaaggaatgctgcaaattctttagcaactcacaaggtcaactcctaaaacaacacatag 10352669  T
Q  292 catgtattgcattttttcttggtttcttttgaaatccagcatacacacattgtcacacatacataaacaaag 363  Q
    |||  ||||   | ||| || ||||||||||||||  ||||||||||||||||  || ||||||||||||||    
T  10352670 catacattgttgtctttttttgtttcttttgaaataaagcatacacacattgt--catatacataaacaaag 10352739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 9068867 - 9068636
Alignment:
Q  26 cttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa-----------ctttcttctgtttacatttcacaacagggtggaatagtc 114  Q
    ||||||||||||| ||||| ||  ||||||||||||||||||||||||||           ||||||||| |||||||  |||  |||||  |||||| |    
T  9068867 cttttgaaaggaattatgcata--tttggagtaatttcatggtaggccaatttctaaacaactttcttctctttacataccacggcagggaagaataggc 9068770  T
Q  115 tcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatggnnnnnnngcaattcataccaaaattctttct 214  Q
    |||||||||||||| |||||||| ||| ||||| |||   |||||| |||||||  ||| ||||||||        ||||||||||||||||||||||||    
T  9068769 tcaacattcagaaataagcttgt-caagataattatt---taggagcgaagatctcaaagaatgaatg-aaaaaaagcaattcataccaaaattctttct 9068675  T
Q  215 ttaatctaatttaaaagaaaaggaatcctgcaaattcttt 254  Q
    |||||||||||| |||| |||||||||||||| |||||||    
T  9068674 ttaatctaattttaaag-aaaggaatcctgcagattcttt 9068636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 367 - 562
Target Start/End: Complemental strand, 11987970 - 11987789
Alignment:
Q  367 attagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaact 466  Q
    |||||| || || |||||||||||| ||||||||||||||||||| |||| |||||||| ||||| || | |||||||||||||| || | | |||||||    
T  11987970 attagaaaatccttgtcctataataggaattcaatttgacctttaacataaagtttaactacatatatcacatgatgggtccattgaattgatattaact 11987871  T
Q  467 tatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctcttgcttgaacgatt---ctccttcctagaattatcaacagggaagga 562  Q
    |||||                ||||||||| |||||||||||||||||| ||||||||||| ||||   || |||||||||||||||||||||||||||    
T  11987870 tatac----------------ataatcaat-aagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatcaacagggaagga 11987789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 315 - 430
Target Start/End: Original strand, 9291519 - 9291648
Alignment:
Q  315 ttcttttgaaatccagcatacacacattgtcacacatacataaacaaag-------------agta-ttagagaacccctgtcctataataagaattcaa 400  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||             |||| |||||||| || |||||||||||||||||||||    
T  9291519 ttcttttgacatccagcatacacacattgtcacatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 9291618  T
Q  401 tttgacctttagcatagagtttaaccacat 430  Q
    ||| ||||||||||||||||||||| ||||    
T  9291619 tttaacctttagcatagagtttaactacat 9291648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 367 - 447
Target Start/End: Complemental strand, 8574013 - 8573931
Alignment:
Q  367 attagagaacccctgtcctata--ataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtc 447  Q
    ||||||||| || ||||||||   ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||    
T  8574013 attagagaatccttgtcctatgtgataagaatttaatttgacctttagcatagagtttaaccacatatatcatatgatgggtc 8573931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 10371185 - 10371235
Alignment:
Q  25 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 75  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10371185 gcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaa 10371235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 10371502 - 10371600
Alignment:
Q  383 cctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaa 481  Q
    ||||| ||||||||||||||||||||||| || ||||||||||  |||| || ||||||||| |||||| |||| | ||||||||||||| | ||||||    
T  10371502 cctatgataagaattcaatttgacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaa 10371600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 9272311 - 9272408
Alignment:
Q  384 ctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaa 481  Q
    ||||||||||||||||||| |||||||||||| | ||||||   || | || ||||||||||| ||||||||| | ||||||||||||| ||||||||    
T  9272311 ctataataagaattcaattagacctttagcattgggtttaattgcaaagatcatatgatgggttcattaaactgacattaacttatacatagcaaaaa 9272408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 7116038 - 7115969
Alignment:
Q  498 aagaagtaccttctcttgctcttgcttgaacgattctc---cttcctagaattatcaacagggaaggaag 564  Q
    |||||||||||||||||||||||||||| | |||||||   ||||||| |||||||||||||||||||||    
T  7116038 aagaagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatcaacagggaaggaag 7115969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 9287941 - 9287991
Alignment:
Q  25 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 75  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  9287941 gcttttgcaaggaactatgcataaatttggagtaatttcatggtaggccaa 9287991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 10351512 - 10351562
Alignment:
Q  25 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 75  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  10351512 gcttttgaaaggaactatgcataaatttggagtactttcatggtaggccaa 10351562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 488 - 564
Target Start/End: Complemental strand, 12006496 - 12006418
Alignment:
Q  488 ataatcaataaagaagtaccttctcttgctcttgcttgaacgattctc---cttcctagaattatcaacagggaaggaag 564  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||   |||| || |||| ||||||||||||||||    
T  12006496 ataatcaataa-gaagtaccttctcttgctcttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaag 12006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 9274146 - 9274273
Alignment:
Q  315 ttcttttgaaatccagcatacacacattgtcacacatacataaacaaag----------agta-ttagagaacccctgtcctataataagaattcaattt 403  Q
    |||||| ||||||  ||||||||||||||||||| ||||||||||||||          |||| |||| ||| || |||||||||||||||||||||  |    
T  9274146 ttctttagaaatcatgcatacacacattgtcacatatacataaacaaaggtagattcaaagtaattagtgaatccttgtcctataataagaattcaacat 9274245  T
Q  404 gacctttagcatagagtttaaccacata 431  Q
    ||||||||||||| |||||||| |||||    
T  9274246 gacctttagcataaagtttaactacata 9274273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 367 - 451
Target Start/End: Original strand, 9364264 - 9364348
Alignment:
Q  367 attagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccatt 451  Q
    ||||||||  || ||||||||||||||||||| ||||||||||||  |||||||||||  ||||| || ||||||||||| ||||    
T  9364264 attagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatatatcatatgatgggttcatt 9364348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 8574291 - 8574241
Alignment:
Q  25 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 75  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||||||    
T  8574291 gcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaa 8574241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 9061930 - 9061802
Alignment:
Q  86 tttacatttcacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatggnn 185  Q
    |||||||  |||| ||||||||||||||||| ||||||||||| ||| |||  |||   |||||||| ||||||||||| |||  ||||||||||||       
T  9061930 tttacataccacagcagggtggaatagtctccacattcagaaataag-ttggccaa---aataattatttaggagtgaaaatctcaaacaatgaatgaaa 9061835  T
Q  186 nnnnngcaattcataccaaaattctttctttaa 218  Q
         ||||||||||||||||||| ||||||||    
T  9061834 caaaagcaattcataccaaaattcgttctttaa 9061802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 502 - 562
Target Start/End: Original strand, 9274277 - 9274340
Alignment:
Q  502 agtaccttctcttgctcttgcttgaacgattctccttc---ctagaattatcaacagggaagga 562  Q
    |||||||| ||||||||||||||| | |||||||||||   |||||||||||||||||||||||    
T  9274277 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacagggaagga 9274340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 10335163 - 10335235
Alignment:
Q  107 gaatagtctcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataaacaatgaatg 182  Q
    |||||||||||||||||||||| |||||||| |||||||  ||||| |||||||||||||||  ||||||| ||||    
T  10335163 gaatagtctcaacattcagaaataagcttgt-caaaata--aattatttaggagtgaagatctcaaacaataaatg 10335235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 9062005 - 9061958
Alignment:
Q  25 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggc 72  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||    
T  9062005 gcttttgaatgaaactatgcataaatttggagtaatttcatggtaggc 9061958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 564
Target Start/End: Original strand, 9291657 - 9291764
Alignment:
Q  458 aaattaacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctcttgcttgaacgattctccttc---ctagaattatcaaca 554  Q
    |||||| |||||| | |||||||| |||||||||||||||| |||||||| | |||| |||||| | | | |||||||||||   ||| |||||||||||    
T  9291657 aaattagcttataaatagcaaaaa-ctcagataatcaataa-gaagtaccgtttctttctcttgttcgtatgattctccttcttcctacaattatcaaca 9291754  T
Q  555 gggaaggaag 564  Q
    ||||||||||    
T  9291755 gggaaggaag 9291764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 9326820 - 9326924
Alignment:
Q  73 caactttcttctgtttacatttcacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataa 172  Q
    |||||||||||| |||||||  |||  ||| ||||||||||||||||||||||||| ||| | ||| ||||    ||||| ||||||||||| |||  ||    
T  9326820 caactttcttctctttacataccacggcagtgtggaatagtctcaacattcagaaataagttggtaaaaaa----aattatttaggagtgaaaatctcaa 9326915  T
Q  173 acaatgaat 181  Q
    |||||||||    
T  9326916 acaatgaat 9326924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 12019266 - 12019216
Alignment:
Q  488 ataatcaataaagaagtaccttctcttgctcttgcttgaacgattctccttc 539  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||||    
T  12019266 ataatcaataa-gaagtaccttctcttgctctttcttgtacgattctccttc 12019216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 10340788 - 10340838
Alignment:
Q  25 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 75  Q
    |||||||||| ||||||||| |||||||| ||||| |||||||||||||||    
T  10340788 gcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaa 10340838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 528 - 565
Target Start/End: Complemental strand, 9065950 - 9065913
Alignment:
Q  528 cgattctccttcctagaattatcaacagggaaggaagt 565  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  9065950 cgattctccttcctacaattatcaacagggaaggaagt 9065913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 10347062 - 10347098
Alignment:
Q  27 ttttgaaaggaactatgcctaaatttggagtaatttc 63  Q
    |||||||||||||||||| ||||||||||||||||||    
T  10347062 ttttgaaaggaactatgcataaatttggagtaatttc 10347098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 9364107 - 9364146
Alignment:
Q  255 agctagtcacaaggtcaattcttaaaccgaaacataacat 294  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  9364107 agctagtcacaaggtcaactcttaaaccgacacataacat 9364146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 10340878 - 10340924
Alignment:
Q  99 acagggtggaatagtctcaacattcagaaagaagcttgtacaaaataa 146  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||||    
T  10340878 acagggtgtaatagtctcaacattcagaaataagcttgt-caaaataa 10340924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 9273940 - 9273990
Alignment:
Q  25 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 75  Q
    |||||||||||||||||||| |||||||  | ||||||||| |||||||||    
T  9273940 gcttttgaaaggaactatgcttaaatttaaaataatttcattgtaggccaa 9273990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 9364009 - 9364063
Alignment:
Q  192 caattcataccaaaattctttctttaatctaatttaaaagaaaaggaatcctgca 246  Q
    |||||||||||||  |||||||||||| |||| ||  ||||||||||||||||||    
T  9364009 caattcataccaaggttctttctttaagctaacttttaagaaaaggaatcctgca 9364063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 10352757 - 10352814
Alignment:
Q  367 attagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaa 424  Q
    ||||||||| || | |||||| |||||||||||||||||||| ||  |||||||||||    
T  10352757 attagagaatccttatcctatgataagaattcaatttgacctataatatagagtttaa 10352814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 9066234 - 9066155
Alignment:
Q  264 caaggtcaattcttaaaccgaaacataacatgtattgcattttttcttggtttcttttgaaatccagcatacacacattgtca 346  Q
    ||||||||| |||||||| || || ||||||| ||||  ||||||    |||||||||| |||| ||||||||||||||||||    
T  9066234 caaggtcaactcttaaactgacacgtaacatgcattgtctttttta---gtttcttttggaatcaagcatacacacattgtca 9066155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 9274028 - 9274064
Alignment:
Q  99 acagggtggaatagtctcaacattcagaaagaagctt 135  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  9274028 acagggtggaatagtcttaacattcagaaataagctt 9274064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 9315503 - 9315551
Alignment:
Q  86 tttacatttcacaacagggtggaatagtctcaacattcagaaagaagct 134  Q
    |||||||  |||| ||||||||||||||||||||||||| ||| |||||    
T  9315503 tttacataccacagcagggtggaatagtctcaacattcaaaaataagct 9315551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 9315600 - 9315648
Alignment:
Q  315 ttcttttgaaatccagcatacacacattgtcacacatacataaacaaag 363  Q
    |||||||||||||||||| ||||||| ||||||| | | ||||||||||    
T  9315600 ttcttttgaaatccagcacacacacaatgtcacatagagataaacaaag 9315648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 382 - 564
Target Start/End: Original strand, 4107 - 4295
Alignment:
Q  382 tcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaa 481  Q
    ||||||||||||||||||||||||  ||||||| |||||||||| | |||||| |||||||||||||||| |||  | ||||||||||||| ||| ||||    
T  4107 tcctataataagaattcaatttgagttttagcacagagtttaactaaataaatcatatgatgggtccattgaacagatattaacttatacacagc-aaaa 4205  T
Q  482 actcagataa-tc---aataaagaagtaccttctcttgctcttgcttgaacgattctccttc---ctagaattatcaacagggaaggaag 564  Q
    ||| | | || ||   ||| || ||||||||| |||||||||||| || | |||||||||||   ||||||||||||||||| |||||||    
T  4206 actgaaaaaactcgataatcaataagtaccttttcttgctcttgcatgtatgattctccttcttactagaattatcaacaggaaaggaag 4295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 1974 - 2079
Alignment:
Q  73 caactttcttctgtttacatttcacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataataattaattaggagtgaagatcataa 172  Q
    |||||||||| | |||||||  |||  ||||||||||||||||||||||||||||| ||||| || |||   |||||||| |||||||| || |||  ||    
T  1974 caactttcttttctttacataacacggcagggtggaatagtctcaacattcagaaataagctggt-caa---aataattatttaggagtcaaaatctcaa 2069  T
Q  173 acaatgaatg 182  Q
    ||||||||||    
T  2070 acaatgaatg 2079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 392 - 517
Target Start/End: Complemental strand, 29443774 - 29443650
Alignment:
Q  392 agaattcaatttgaccttt-agcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactcagata 490  Q
    ||||||||||||||||||| | ||| ||||||||| | ||| || |||||||||||||||| || | | |||||||||||||||| ||||||||||| ||    
T  29443774 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaag-aaaaaactcaggta 29443676  T
Q  491 atcaataaagaagtaccttctcttgct 517  Q
    |||||| ||||||||||||||||||||    
T  29443675 atcaat-aagaagtaccttctcttgct 29443650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 367 - 517
Target Start/End: Complemental strand, 29453780 - 29453633
Alignment:
Q  367 attagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaact 466  Q
    ||||||||| || ||| |||||||||||||||||||| || |||| |||| ||||||||  |||| || ||||||||| || ||| |||| |||||||||    
T  29453780 attagagaatccttgttctataataagaattcaattt-acttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaattaact 29453682  T
Q  467 tatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgct 517  Q
    |||||| ||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  29453681 tatacagagc-aaaaactcagataataaat-aaggagtaccttctcttgct 29453633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 410
Target Start/End: Complemental strand, 29468329 - 29468228
Alignment:
Q  316 tcttttgaaatccagcatacacacattgtca----cacatacataaacaaag---agtattagagaacccctgtcctataataagaattcaatttgacct 408  Q
    |||||||||||||||||||||||||||||||    || ||||||||||||||   |  ||||||||| |  |||||||||||||||||||||||||||||    
T  29468329 tcttttgaaatccagcatacacacattgtcaaatacatatacataaacaaagtaaataattagagaatcattgtcctataataagaattcaatttgacct 29468230  T
Q  409 tt 410  Q
    ||    
T  29468229 tt 29468228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 451
Target Start/End: Original strand, 29422960 - 29423043
Alignment:
Q  367 attagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccatt 451  Q
    ||||||||| |  |||| ||||||||||||||||||||||||||   | |||||||||| | ||| || ||||||| ||||||||    
T  29422960 attagagaatcattgtcatataataagaattcaatttgaccttt-taacagagtttaactagatatatcatatgatcggtccatt 29423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 29454087 - 29454036
Alignment:
Q  95 cacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataat 147  Q
    |||||||||||||||||| |||||||||| |||| ||| ||| ||||||||||    
T  29454087 cacaacagggtggaatagactcaacattccgaaataagtttg-acaaaataat 29454036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 247 - 481
Target Start/End: Original strand, 37461982 - 37462232
Alignment:
Q  247 aattctttagctagtcacaaggtcaattcttaaaccgaaacataacatgtattgcatttt---ttcttggtttcttttgaaatccagcatacacacattg 343  Q
    |||||||||||||||||||||||||||||||||||  | |||||  ||  ||||  || |   || ||  |||||||||||||| |||||||||||||||    
T  37461982 aattctttagctagtcacaaggtcaattcttaaactaacacatagaattcattg--ttgtcaattttttatttcttttgaaatctagcatacacacattg 37462079  T
Q  344 tcacacatacataaacaaag-------------agta-ttagagaacccctgtcctataataagaattcaatttgacc-tttagcatagagtttaaccac 428  Q
    ||||| ||||||||||||||             |||| |||||||| || |||||||||| ||||||||||||||||| |||||||||||  ||||| ||    
T  37462080 tcacatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactac 37462179  T
Q  429 ataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaa 481  Q
    ||| || |||||||||||||| | |||||| |  |||||||||| | ||||||    
T  37462180 atatatcatatgatgggtccaatgaactaacagaaacttatacataacaaaaa 37462232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 382 - 517
Target Start/End: Complemental strand, 41967202 - 41967070
Alignment:
Q  382 tcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaa 481  Q
    |||||||||||||||||||||| ||||||| ||||||||||||  ||||  ||| |||||||||||||||  ||| ||  |||| |||||||||| ||||    
T  41967202 tcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgggtccattgcact-aatctaacatatacaaagc-aaaa 41967105  T
Q  482 actcagataatcaataaagaagtaccttctcttgct 517  Q
     || ||||||| ||  ||||||||||||||||||||    
T  41967104 gctaagataatgaa-caagaagtaccttctcttgct 41967070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 41968224 - 41968174
Alignment:
Q  25 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 75  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||||||||    
T  41968224 gcttctgaaaggaactatgcataaattaggagtaatttcatggtaggccaa 41968174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 41967284 - 41967235
Alignment:
Q  314 tttcttttgaaatccagcatacacacattgtcacacatacataaacaaag 363  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  41967284 tttcttttgaaatccagcatacacacattatcacatgtacataaacaaag 41967235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 26574416 - 26574461
Alignment:
Q  100 cagggtggaatagtctcaacattcagaaagaagcttgtacaaaataa 146  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||    
T  26574416 cagggtggaatagtctcaacattcagaaataagcatgt-caaaataa 26574461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 26574543 - 26574600
Alignment:
Q  367 attagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaa 424  Q
    ||||||||| || | |||||| |||||||||||||||||||| ||  |||||||||||    
T  26574543 attagagaatccttatcctatgataagaattcaatttgacctataatatagagtttaa 26574600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University