View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_high_9 (Length: 522)
Name: NF13672_high_9
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 31001852 - 31002367
Alignment:
| Q |
1 |
ggaggaatattccggtggcgtctctttggaccatgtcagcgtcattttactccatgttgcatcatcttgaggtcttttcacgacaccaacatttaactca |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31001852 |
ggaggaatattccggtggcgcctctttggaccatgtcagcgtcattttactccatgttgcatcatcttgaggtcttttcacgacaccaacatttaactca |
31001951 |
T |
|
| Q |
101 |
tgataagctgggtaagaaataggatttcatgtagtaaaaaagttgacacttgatacttggcttaaccatggtcgtcgaattgagatccgattcaaaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31001952 |
tgataagctgggtaagaaataggatttcatgtagtaaacaagttgacacttgatacttggcttaaccatggtcgtcgaattgagatccgattcaaaattt |
31002051 |
T |
|
| Q |
201 |
aaatacaaaatcttgagtttgaaagttgaacgtcacaaggatattagtcttgacatttattcttcaatctctatttttggtgattggacataattagtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31002052 |
aaatacaaaatcttgagtttgaaagttgaacgtcacaaggatattagtcttgacatttattcttcaatctctatttttggtgattggacataattagtat |
31002151 |
T |
|
| Q |
301 |
gcagtgatacttttatttattgcatatcatcatctgctgaatattaatgcaattgtacatgaccgcatatctaatctgtgcagagaacgtcccaggaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31002152 |
gcagtgatacttttatttattgcatatcatcatctgctgaatattaatgcaattgtacatgaccgcatatctaatctgtgcagagaacgtcccaggaatt |
31002251 |
T |
|
| Q |
401 |
tcgtctcttcatatagaagaccttcgatctgttgttcgcggaaaccatcctcgagcaatgcagctctcattggaatgcatttccaaagttaccaaagcaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31002252 |
tcgtctcttcatatagaagaccttcgatctgttgttcgcggaaaccatcctcgagcaatgcagctctcattggaatgcatttccaaagttaccaaagcaa |
31002351 |
T |
|
| Q |
501 |
attaccttcatctcac |
516 |
Q |
| |
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||||||||| |||||| |
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| T |
31002352 |
attaccttcttctcac |
31002367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 287 - 516
Target Start/End: Original strand, 30998970 - 30999203
Alignment:
| Q |
287 |
gacataattagtatgcagtgatacttttatttattgcatat----catcatctgctgaatattaatgcaattgtacatgaccgcatatctaatctgtgca |
382 |
Q |
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|||||| ||| |||| ||||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||| || ||||||||||||||| |
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| T |
30998970 |
gacatatttaatatggagtgatacttttatttattgcatatatatcattatctgctaaaaattaatgcaattgtacatgactgcttatctaatctgtgca |
30999069 |
T |
|
| Q |
383 |
gagaacgtcccaggaatttcgtctcttcatatagaagaccttcgatctgttgttcgcggaaaccatcctcgagcaatgcagctctcattggaatgcattt |
482 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| | || |||||||||||||||||||||| |
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| T |
30999070 |
gagaatatccctggaatttcgtctcttcatatagaagaccttcgaactgttgttcgcggagacgatcctcaaaatatacagctctcattggaatgcattt |
30999169 |
T |
|
| Q |
483 |
ccaaagttaccaaagcaaattaccttcatctcac |
516 |
Q |
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|||| |||||||||||||||||||||| |||||| |
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| T |
30999170 |
ccaaggttaccaaagcaaattaccttcttctcac |
30999203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 30990609 - 30990747
Alignment:
| Q |
1 |
ggaggaatattccggtggcgtctctttggaccatgtcagcgtcattttactccatgttgcatcatcttgaggtcttttcacgacaccaacatttaactca |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
30990609 |
ggaggaatatcccggtggcgtctctttggaccatgtcggcgtcattttactccatgttgcatcatcttgaggtcttttcacgacaccagcacttaactca |
30990708 |
T |
|
| Q |
101 |
tgataagctgggtaagaaataggatttcatgtagtaaaa |
139 |
Q |
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|||||||||||||||| |||| || |||||||||||||| |
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| T |
30990709 |
tgataagctgggtaagcaatatgaattcatgtagtaaaa |
30990747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 325 - 516
Target Start/End: Original strand, 30992041 - 30992232
Alignment:
| Q |
325 |
tatcatcatctgctgaatattaatgcaattgtacatgaccgcatatctaatctgtgcagagaacgtcccaggaatttcgtctcttcatatagaagacctt |
424 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| | || ||||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||| |
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| T |
30992041 |
tatcatcatctgccgaatattaatgcaattgtacatgcctgcgtatctaatctgtgcagagaacatcccagaaatttcgtctgttcatatggaagacctt |
30992140 |
T |
|
| Q |
425 |
cgatctgttgttcgcggaaaccatcctcgagcaatgcagctctcattggaatgcatttccaaagttaccaaagcaaattaccttcatctcac |
516 |
Q |
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||| ||||||| ||| ||||| ||| | | |||||||||| || |||||||||||||| | |||| ||||||||||||||||| |||||| |
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| T |
30992141 |
cgaactgttgtacgcagaaacgatcagccaacaatgcagcttgcactggaatgcatttccgaggttaacaaagcaaattaccttcttctcac |
30992232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 30995784 - 30995922
Alignment:
| Q |
1 |
ggaggaatattccggtggcgtctctttggaccatgtcagcgtcattttactccatgttgcatcatcttgaggtcttttcacgacaccaacatttaactca |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
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| T |
30995784 |
ggaggaatattccggtggcatctctttggactatgtccgcatcattttactccatgttgcatcatcttgaggtcttttcacgtcatcaacacttaactca |
30995883 |
T |
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| Q |
101 |
tgataagctgggtaagaaataggatttcatgtagtaaaaaagt |
143 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||| |
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| T |
30995884 |
tgataagctgggtaagcaatagga----atgtagtaaaaaagt |
30995922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 30987909 - 30987991
Alignment:
| Q |
1 |
ggaggaatattccggtggcgtctctttggaccatgtcagcgtcattttactccatgttgcatcatcttgaggtcttttcacga |
83 |
Q |
| |
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|||||||| ||||||||||| | ||||||| ||||| ||||| |||||||| ||||||||||||||||| || ||||||||| |
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| T |
30987909 |
ggaggaatgttccggtggcggcgttttggactatgtctgcgtcgttttactctatgttgcatcatcttgatgtgttttcacga |
30987991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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