View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_low_1 (Length: 902)
Name: NF13672_low_1
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 214 - 557
Target Start/End: Complemental strand, 55272319 - 55271976
Alignment:
| Q |
214 |
acagttgagggagaattgcttcaaaagggttcgacaagacagaagcagattgctttggaaatgtaggctctcttcctccgatgatgactcctctcgtctt |
313 |
Q |
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| T |
55272319 |
acagttgagggagaattgcttcaaaagggttcgacaagacagaagcagattgctttggaaatgtaggctctcttcctccgatgatgaatcctctcgtctt |
55272220 |
T |
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| Q |
314 |
cttcataatcaggatgagttggatatcgtgttccgtgatattgtatctgatgaattgaataagatcaataatgatgacaatgatcttttatggaacgatg |
413 |
Q |
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| T |
55272219 |
cttcataatcaggatgagttggatatcgtgttccgtgatattgtatctgatgaattgaataagatcaataatgatgacaatgatcttttatggaacgatg |
55272120 |
T |
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| Q |
414 |
acctcaaagcagctcatgagggtgattgccaagacattcttcttgaaatgcaaaacttattttatcaagacctcgattctcatattgatacttgggaaga |
513 |
Q |
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| T |
55272119 |
acctcaaagcagctcatgagggtgattgccaagacattcttcttgaaatgcaaaacttattttatcaagacctcgattctcatattgatacttgggaaga |
55272020 |
T |
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| Q |
514 |
tgaagttgatcactacttggctcgtgctgtttatgaccatatgc |
557 |
Q |
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| T |
55272019 |
tgaagttgatcactacttggctcgtgctgtttatgaccatatgc |
55271976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 619 - 885
Target Start/End: Complemental strand, 55271907 - 55271641
Alignment:
| Q |
619 |
tttttattcaacaatattcatactctctttctcatttcattctccatattaattcttaattcttaattcatagacatttggacaacaaatttggtgtcct |
718 |
Q |
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| T |
55271907 |
tttttattcaacaatatttatactctctttctcatttcattctccaaattaattcttaattcttaattcatagacatttggagaacaaatttggtgtcct |
55271808 |
T |
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| Q |
719 |
ctttgtaagcaaggacagctcaaagacactcacaatctcatctactgcactcgttgtaaacttcaactaaccaaagccgacgaggtacttgcatttctca |
818 |
Q |
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| T |
55271807 |
ctttgtaagcaaggacagctcaaagacactcacaatctcatctactgcactcgttgtaaacttcaactaaccaaagctgacgaggtacttgcatttctca |
55271708 |
T |
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| Q |
819 |
cttattcatttaattgttcactgcattttatcaattctatttttatactttcacacgtaaatacaca |
885 |
Q |
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| T |
55271707 |
cttattcatttaattgttcactgcattttatcaattctatttttatactttcacacgtaaatacaca |
55271641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 55272523 - 55272385
Alignment:
| Q |
18 |
agtgtgggaagtggaagctgcgatgcgatg-----gaggaaataggcacatcaacaacagcagtgaagaagaaggcgatgttgcggccatctttaaaatc |
112 |
Q |
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| T |
55272523 |
agtgtgggaagtggaagctgcgatgcgatgcgatggaggaaataggcacatcaacaacagcag---agaagaaggcgatgttgcggccgtctttaaaatc |
55272427 |
T |
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| Q |
113 |
cgattctgaattcaacaattaccaactctggaaacaaaaggt |
154 |
Q |
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| T |
55272426 |
cgattctgaattcaacaattaccaactctggaaacaaaaggt |
55272385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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