View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13672_low_11 (Length: 517)
Name: NF13672_low_11
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 36464554 - 36465017
Alignment:
| Q |
18 |
acatagagtttgacatggtcatgctgcaaagcaagattccatttcttttgtagatgatcgttgaagaatgttaaatgtgtttgtactgttggagtgcttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36464554 |
acatagagtttgacatggtcatgctgcaaagcaagattccatttcttttgtagatgatcgttgaagaatgttaaatgtgtttgtactgttggagtgcttt |
36464653 |
T |
|
| Q |
118 |
agcagcaatttttctcattttttgtaagttttaattactaactgtgacatacaattcaattcaaaacgaggtgctccaaacacttatgaattagaagtag |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36464654 |
agcagcaatttttctcattttttgaaagttctaattactaactgtgacatacaattcaattcaaaacgaggtgctcaaaacacttatgaattagaagtag |
36464753 |
T |
|
| Q |
218 |
aaggatatatagaaaaatg---------ttattcctcaagttgctcttttacattctctcactaactcctccaactctcactctcttaaccaagaatgtc |
308 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36464754 |
aaggatatatagaaaaatggttgagatattattcctcaagttgctctttcacattctctcactaactcctccaactctcactctcttaaccaagaatgtc |
36464853 |
T |
|
| Q |
309 |
tctactctcatcatagtagtggcatatccttccttaattgagcaatcgaagcttaaccgcagaatactttatattttccgcttctcggctacaaaaatgt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36464854 |
tctactctcatcatagtagtggcatatcct----taattgagcaatcgaagcttaaccgcagaatactttatattttccgcttctcggctacaaaaatgt |
36464949 |
T |
|
| Q |
409 |
accataatgacaagtcaaagtgaatttatgtctcccatgcttggttgattttgttcattttcccacat |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
36464950 |
accataatgacaagtcaaagtgaatttatgtctcccacgcctggttgattttgttcattttcccacat |
36465017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University