View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_low_12 (Length: 517)
Name: NF13672_low_12
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_12 |
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| [»] scaffold0941 (1 HSPs) |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 7 - 498
Target Start/End: Complemental strand, 30411529 - 30411040
Alignment:
| Q |
7 |
tccaaggttatggagccatctatgggaatgattgttaatagacatctagggttcataggtaaaacatatatcatgcttatatttaataagaagtttcttt |
106 |
Q |
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| T |
30411529 |
tccaaggttatggagccatctaggggaatgattgttaatagacatctagggttcataggtaaaacatatatcatgcttatatttaataagaagtttcttt |
30411430 |
T |
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| Q |
107 |
aaagctaattttgtgggagtattagataaacctctgaagttccaatagcactcatctaaaaggtttgggaggaccaacctttgatctggcaagataaggt |
206 |
Q |
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| T |
30411429 |
aaagctaattttgtgggagtattagctaaacctctgaagttccaatagcactcatctaaaaggtttgggaggaccaacctttgatctggcaagataaggt |
30411330 |
T |
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| Q |
207 |
tttgactttgagatcctctgagtactagatttctttgaagctttcttttgttgatttgctagtaacaatctgaaacccttgttcatcaacatcaaggtta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30411329 |
tttgactttgagatcctctgagtactagatttctttgaagctttcttttgttgatttgctagtaacaatctgaaacccttgttcatcaacatcaaggtta |
30411230 |
T |
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| Q |
307 |
agagcatctgcttctttggaaaaagatgtttctgcaggtaacttaccaatcaagtttctagctgtatttacctcctgacctgttacttgacagcattgag |
406 |
Q |
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| T |
30411229 |
agagcatctgcttctttggacaaagatgtttctgcaggtaacttaccaatcaagtttctagatgtatttgcctcctgacctgt--attgacagcattgag |
30411132 |
T |
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| Q |
407 |
atcttgttcaaagtcaccatcattggctccatctcaacaaggttggaccatgactcttttaagaactagatatcttgttgcaggactgcttg |
498 |
Q |
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| T |
30411131 |
atcttgttcaaagtcaccatcattggcttcatctcaacaaggttggaccatgactcttttaagaactagatatcttgttgcaggactgcttg |
30411040 |
T |
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Target: scaffold0941 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 1606 - 1518
Alignment:
| Q |
109 |
agctaattttgtgggagtattagataaacctctgaagttccaata---gcac-tcatctaaaaggtttgggaggaccaacctttgatct |
193 |
Q |
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|||||||||||| |||| ||||| ||||||||| ||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |
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| T |
1606 |
agctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgatct |
1518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 36512 - 36600
Alignment:
| Q |
109 |
agctaattttgtgggagtattagataaacctctgaagttccaata---gcac-tcatctaaaaggtttgggaggaccaacctttgatct |
193 |
Q |
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|||||||||||| |||| ||||| ||||||||| ||||||||||| |||| |||| ||||| | ||||||| || |||||||||||| |
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| T |
36512 |
agctaattttgtaggagaattagctaaacctcttaagttccaataaatgcacttcatataaaatgcttgggagcacgaacctttgatct |
36600 |
T |
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