View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_low_13 (Length: 478)
Name: NF13672_low_13
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 49525948 - 49525648
Alignment:
| Q |
4 |
aaatatcttcgcatgtacatacagtagcttgtggacaattctgggcataattaattccttagaatgtttttgtgtatatgtatatcaaacatgtgagtaa |
103 |
Q |
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| T |
49525948 |
aaatatcttcgcatgtacatacagtggcttgtggacaattctgggtataattaattccttagaatgtttttgtgtatatgtatatcaaacatgtgagtaa |
49525849 |
T |
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| Q |
104 |
atatttcccatcttacattcttgggaacttagtttgtagaggttaaacatacacccctaagtttatgttgggttctaattaacatgagaaatcctaattt |
203 |
Q |
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| T |
49525848 |
atatttcccatcttacattcttgggaacttagtttgtagaggttaaacatacacccctaagtttatgttgggttctaattaacatgagaaatcctaattt |
49525749 |
T |
|
| Q |
204 |
tagcctcaccct---------tatcttctatgtctgatttatccattctcctttcatcttcttcttcctcttgttcatgccatcatgtatactattatca |
294 |
Q |
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| T |
49525748 |
tagcctcacccttaccttctataccttctatgtctgatttatccattctcctttcatcttcttcttcctcttgttcatgccatcatgtatactattatca |
49525649 |
T |
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| Q |
295 |
a |
295 |
Q |
| |
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| |
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| T |
49525648 |
a |
49525648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 45355348 - 45355262
Alignment:
| Q |
44 |
ctgggcataattaattccttagaatgtttttgtgtatatgtatatcaaacatgtgagtaaatatttcccatcttacattcttgggaa |
130 |
Q |
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| T |
45355348 |
ctgggaataattcattccttggaatatttttgtgtgcatgtctaccaaacatgggaataaataattcccatcttagattcctgggaa |
45355262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 45369089 - 45369003
Alignment:
| Q |
44 |
ctgggcataattaattccttagaatgtttttgtgtatatgtatatcaaacatgtgagtaaatatttcccatcttacattcttgggaa |
130 |
Q |
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| T |
45369089 |
ctgggaataattcattccttggaatatttttgtgtgcatgtctaccaaacatgggaataaataattcccatcttagattcctgggaa |
45369003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 55447927 - 55448041
Alignment:
| Q |
50 |
ataattaattccttagaatgtttttgtgtatatgtatatcaaacatgtgagtaaatatttcccatcttacattcttgggaacttagtttgtagaggttaa |
149 |
Q |
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| T |
55447927 |
ataattaattccttataacctttttttatgcatgtgtatcaaacattggaataaatagttcctatcttacattctcagaaacttattttgtagaagtgaa |
55448026 |
T |
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| Q |
150 |
acatacacccctaag |
164 |
Q |
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| T |
55448027 |
acaaacgcccctaag |
55448041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 17902247 - 17902327
Alignment:
| Q |
50 |
ataattaattccttagaatgtttttgtgtatatgtatatcaaacatgtgagtaaatatttcccatcttacattcttgggaa |
130 |
Q |
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|||||| ||||| | |||| ||||||||| |||| || |||||||| || |||||| ||||||||||| |||| |||||| |
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| T |
17902247 |
ataattcattccctggaatatttttgtgtgcatgtctaccaaacatgggaataaataattcccatcttagattcctgggaa |
17902327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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