View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13672_low_14 (Length: 462)

Name: NF13672_low_14
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13672_low_14
NF13672_low_14
[»] chr4 (13 HSPs)
chr4 (19-456)||(6997205-6997642)
chr4 (30-305)||(7015738-7016014)
chr4 (30-332)||(7042350-7042656)
chr4 (30-312)||(7058424-7058704)
chr4 (30-309)||(7049503-7049786)
chr4 (216-306)||(7006175-7006265)
chr4 (30-145)||(7029193-7029307)
chr4 (216-309)||(7022827-7022920)
chr4 (30-126)||(7022442-7022537)
chr4 (216-306)||(7008021-7008111)
chr4 (216-305)||(7029582-7029671)
chr4 (34-156)||(7007122-7007244)
chr4 (34-90)||(7006032-7006088)
[»] chr2 (2 HSPs)
chr2 (378-456)||(2933074-2933153)
chr2 (227-291)||(5887768-5887832)
[»] chr3 (1 HSPs)
chr3 (214-292)||(46176068-46176146)
[»] chr5 (1 HSPs)
chr5 (374-418)||(17624082-17624126)


Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 6997205 - 6997642
Alignment:
Q  19 aatcaacaattctttcatgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaagaacttgactaattaaataacaagtgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6997205 aatcaacaattctttcatgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaagaacttgactaattaaataacaagtgat 6997304  T
Q  119 attttgttcttttaagaataacactcaaattggtgaaatatttcagtgtcttcaaagggattatgcaaattcattataatgatttttgcttaattaattg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6997305 attttgttcttttaagaataacactcaaattggtgaaatatttcagtgtcttcaaagggattatgcaaattcattataatgatttttgcttaattaattg 6997404  T
Q  219 cagggttcaggacatacagctccagagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaatcagaatcccta 318  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6997405 cagggttcaggacatacagctcctgagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaatcagaatcccta 6997504  T
Q  319 gatggaattaatatggttatataagcatgagatgttcgtttgtcaattcactcctttgctcagttatcacccaccatccctacccttggcacaaacactt 418  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6997505 gatggaattaatatggttatataagcatgagatgttcatttttcaattcactcctttgctcagttatcaaccaccatccctacccttggcacaaacactt 6997604  T
Q  419 taccaccgtcccttcccatttaatcggttgatcattga 456  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6997605 taccaccgtcccttcccatttaatcggttgatcattga 6997642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 7015738 - 7016014
Alignment:
Q  30 ctttcatgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaagaacttgactaattaaataacaagtgatattttgttctt 129  Q
    ||||| ||||||||||||||||| |||||||||| |||||| |||| ||| ||||||||||||| || ||||||||||| |  |||| | ||||||||||    
T  7015738 ctttcttgcagatacacaaggacttactcgaatcaaatgacatttgtaactgtgaaggtaagaaatt-actaattaaatcattagtgcttttttgttctt 7015836  T
Q  130 ttaagaataacactcaaattggtgaaatatttcagtgtcttcaaagggattatgcaaattcattataatgatttttgcttaattaatt--gcagggttca 227  Q
    |||||| |||||||||| || ||||||||||| ||  |||| ||||||||||| |||||||||||||  || ||||| ||||||||||  ||||||||||    
T  7015837 ttaagattaacactcaatttagtgaaatatttaagcatctttaaagggattatccaaattcattatatcgacttttgattaattaattttgcagggttca 7015936  T
Q  228 ggacatacagctccagagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaa 305  Q
    |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| || |||||||||    
T  7015937 ggacatacagctcctgagtacactcctgatcaatgttttggcatgttcactaggtggatatctaatttacctttgtaa 7016014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 7042350 - 7042656
Alignment:
Q  30 ctttcatgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaagaacttgactaattaaataacaagtgatattttgttctt 129  Q
    ||||||| ||||||||||||||| ||| | ||||| ||||| |||||||| ||||||||||||| || | ||||||||| | ||||| | |||||||| |    
T  7042350 ctttcatacagatacacaaggacttacgcaaatcgcatgacatttgcaactgtgaaggtaagaaatt-agtaattaaatcataagtgctcttttgttcat 7042448  T
Q  130 ttaagaataacac--tcaaattggtga-aatatttcagtgtcttcaaagggattatgcaaattcattataatgatttttgcttaattaatt--gcagggt 224  Q
    |||| || |||||  |||| ||||||| |||||   ||||||||  | | |||| | |||  || ||| |  |||||| |  |||||||||  |||||||    
T  7042449 ttaataaaaacacactcaatttggtgagaatatgcaagtgtctttgatgagattgtacaacatctttagatcgattttcgtgtaattaattttgcagggt 7042548  T
Q  225 tcaggacatacagctccagagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaatcagaatccctagatgga 324  Q
    || |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||    
T  7042549 tcgggacatacagctcctgagtacactcctgagcaatgttttcccatgttcactaggtggatatctaatttgcctttgtaaatcagaatctcaagatgga 7042648  T
Q  325 attaatat 332  Q
    || |||||    
T  7042649 ataaatat 7042656  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 30 - 312
Target Start/End: Original strand, 7058424 - 7058704
Alignment:
Q  30 ctttcatgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaagaacttgactaattaaataacaagtgatattttgttctt 129  Q
    ||||||||||||||||||||||| |||||||| | |||||| | |||||| ||||||||||||  ||     ||||| |||||||||||||||||||||     
T  7058424 ctttcatgcagatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagatt-----attaa-taacaagtgatattttgttcta 7058517  T
Q  130 ttaagaataa-cactcaaattggtgaaat-atttcagtgtcttcaaagggattatgcaaattcattataatgatttttgcttaattaatt--gcagggtt 225  Q
    ||||||| || ||||||| |||||||||  |||| ||||||||  | |  ||| || || ||| |||||   |||||    |||||||||  ||||||||    
T  7058518 ttaagaaaaaacactcaatttggtgaaaacatttaagtgtctttgatgaaattgtgtaatttccttatatcaattttcatgtaattaattttgcagggtt 7058617  T
Q  226 caggacatacagctccagagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaatcagaa 312  Q
    ||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  7058618 caggacatatagctcctgagtacactcctgagctatgttttcccatgttcactaggtggatatctaatttgcctttgtaaatcagaa 7058704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 309
Target Start/End: Original strand, 7049503 - 7049786
Alignment:
Q  30 ctttcatgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaagaacttgactaattaaataacaagtgatattttgttctt 129  Q
    ||||||||||||||||||||||| |||||||| |||||||| | |||||| ||||||||||||| || | ||||||||| ||||||  | ||||||||||    
T  7049503 ctttcatgcagatacacaaggacttactcgaaccgaatgacatatgcaactgtgaaggtaagaaatt-attaattaaatcacaagtactcttttgttctt 7049601  T
Q  130 ttaag-aataacactcaaattggtgaaat-atttcagtgtcttcaaagggattatgcaaattcattataatgatttttgcttaattaa---ttgcagggt 224  Q
    ||||| || |||||| || || ||||||  |||| |||||||   | | |||| ||||| ||| ||| |   |||||    |||||||   |||||||||    
T  7049602 ttaagtaaaaacacttaatttcgtgaaaacatttaagtgtctctgatgagattgtgcaatttccttacatcaattttcatgtaattaaattttgcagggt 7049701  T
Q  225 tcaggacatacagctccagagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaatca 309  Q
    |||||||||| |||||| |||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  7049702 tcaggacatatagctcctgagtacactcctgagctatgttttcccatgttctctaggtggatatctaatttgcctttgtaaatca 7049786  T

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Target: chr4; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 7006175 - 7006265
Alignment:
Q  216 ttgcagggttcaggacatacagctccagagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaa 306  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  7006175 ttgcagggttcaggacatacagctcctgagtacactcctgagcaatgttttcccatgttcactaggtggatatctaatttgcctttgtaaa 7006265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 7029193 - 7029307
Alignment:
Q  30 ctttcatgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaagaacttgactaattaaataacaagtgatattttgttctt 129  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| ||| || ||||||||||||||||||||| ||||||| ||    
T  7029193 ctttcatgcagatacacaaggacttactcaaatcgaatgacatttgcaactgtgaaggtaggaaatt-actaattaaataacaagtgatcttttgttatt 7029291  T
Q  130 ttaagaataacactca 145  Q
    ||||||| || |||||    
T  7029292 ttaagaaaaatactca 7029307  T

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Target: chr4; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 7022827 - 7022920
Alignment:
Q  216 ttgcagggttcaggacatacagctccagagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaatca 309  Q
    |||||||||||||||||||||||||| | | |  ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7022827 ttgcagggttcaggacatacagctcctgcggatgctcctgaacaatgttttgccatgttcactaggtggatatctaatttgcctttgtaaatca 7022920  T

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Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 7022442 - 7022537
Alignment:
Q  30 ctttcatgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaagaacttgactaattaaataacaagtgatattttgtt 126  Q
    |||||||| |||||||||||||| | ||| ||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||| |||||||    
T  7022442 ctttcatgtagatacacaaggacttgctcaaatcgaatgacatttgcaactgtgaaggtaagaaatt-actaattaaataacaagtgatcttttgtt 7022537  T

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Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 7008021 - 7008111
Alignment:
Q  216 ttgcagggttcaggacatacagctccagagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaa 306  Q
    ||||||||||| ||||||| ||||||  ||||||||||||||||||||||| ||||||||  ||||||||||||||| |||| ||||||||    
T  7008021 ttgcagggttctggacatatagctccttagtacactcctgagcaatgttttcccatgttccttaggtggatatctaatttgcgtttgtaaa 7008111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 7029582 - 7029671
Alignment:
Q  216 ttgcagggttcaggacatacagctccag-agtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaa 305  Q
    |||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||    
T  7029582 ttgcagggttcaggacatacagctcctgcagt-cactcctgagcaatgtttagccatgttcaccaggtggacatctaatttgcctttgtaa 7029671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 7007122 - 7007244
Alignment:
Q  34 catgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaagaacttgactaattaaataacaagtgatattttgttcttttaa 133  Q
    ||||||||| |||||||||  |||||||||  ||||| |||||||| ||||||||||||| || | ||||||||| ||||||| | ||||||||||||||    
T  7007122 catgcagatgcacaaggactcactcgaatcacatgacatttgcaactgtgaaggtaagaaatt-attaattaaatcacaagtgctcttttgttcttttaa 7007220  T
Q  134 g-aataacactcaaattggtgaaa 156  Q
    | || |||| |||| |||||||||    
T  7007221 gaaaaaacagtcaatttggtgaaa 7007244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 7006032 - 7006088
Alignment:
Q  34 catgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaa 90  Q
    ||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||||    
T  7006032 catgcagatacacaaggacttactccaatcgcatgacatttgcaactgtgaaggtaa 7006088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 456
Target Start/End: Original strand, 2933074 - 2933153
Alignment:
Q  378 tcagttatcacccaccatccctacccttggcacaaacacttta-ccaccgtcccttcccatttaatcggttgatcattga 456  Q
    |||||||||| |||||||||||||||| |  |||||||||||| ||||| |||||||||| | || ||||||||||||||    
T  2933074 tcagttatcatccaccatccctaccctcgagacaaacactttacccaccatcccttcccactcaaccggttgatcattga 2933153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 5887768 - 5887832
Alignment:
Q  227 aggacatacagctccagagtacactcctgagcaatgttttgccatgttcactaggtggatatcta 291  Q
    |||||| ||||||||||||| |   |||||  |||||||||||||||| | ||||||||||||||    
T  5887768 aggacacacagctccagagttccgacctgaagaatgttttgccatgtttagtaggtggatatcta 5887832  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 46176146 - 46176068
Alignment:
Q  214 aattgcagggttcaggacatacagctccagagtacactcctgagcaatgttttgccatgttcactaggtggatatctaa 292  Q
    |||| |||||| |||||||||| |||||||||||||  | |||  |||| || |||||||| | |||||||||||||||    
T  46176146 aattacagggtgcaggacatacggctccagagtacaaacgtgaagaatgcttagccatgttgagtaggtggatatctaa 46176068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 17624082 - 17624126
Alignment:
Q  374 ttgctcagttatcacccaccatccctacccttggcacaaacactt 418  Q
    ||||||| ||||||||||||||||||||| ||||||  |||||||    
T  17624082 ttgctcaattatcacccaccatccctaccattggcaataacactt 17624126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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