View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13672_low_15 (Length: 431)
Name: NF13672_low_15
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 46131967 - 46132383
Alignment:
| Q |
1 |
agcacagacgcggatatgctgggactttgtctgactgggctgtataacattttaaaggcaggagaaatttacaaggataagattaaagagtgtgcaggat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46131967 |
agcacagacgcggatatgctgggactttgtctgactgggctgtataacattttaaaggcaggagaaattaacaaggataagattaaagagtgtgcaggat |
46132066 |
T |
|
| Q |
101 |
tggataagattaaaagattgcaaagctgtaacatggcggtgtacattttgaagacatattttcctgaggaccttgaagctatagctgaagagaaaccgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46132067 |
tggataagattaaaagattgcaaagctgtaacatggcggtgtacattttgaagacatattttcctgaggaccttgaagctatagctgaagagaaaccgta |
46132166 |
T |
|
| Q |
201 |
gatgactaggtttccatgttattcctatattcaacagatagctgtcttacatatagtaacattac----------------------atttgtatatgtt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46132167 |
gatgactaggtttccatgttattcctatattcaacagatagctgtcttacatatagtaacattacaatgagagaaaagaaaaaatatatttgtatatgtt |
46132266 |
T |
|
| Q |
279 |
atatttgctccctgtgtgatcggttctgctctttattttatttaacatatatttcatagagtaattattgttgcacacttgtatatgatcactggtgtgt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46132267 |
atatttgctccctgtgtgatcggttctgctctttattttagttaacatatatttcatagagtaattattgttgcacacttgtatatgatcactggtgtgt |
46132366 |
T |
|
| Q |
379 |
acaatctaagaggcata |
395 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
46132367 |
acaatctaaaaggcata |
46132383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 138 - 265
Target Start/End: Original strand, 46705244 - 46705371
Alignment:
| Q |
138 |
ggtgtacattttgaagacatattttcctgaggaccttgaagctatagctgaagagaaaccgtagatgactaggtttccatgttattcctatattcaacag |
237 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46705244 |
ggtgtacattttggagacatattttcctggggaccttgaagctatagctcaagagaaaccgtagatgactaggtttccatgttattcctatattgaacag |
46705343 |
T |
|
| Q |
238 |
atagctgtcttacatatagtaacattac |
265 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
46705344 |
ttagctgtcttacatatactaacattac |
46705371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 46126336 - 46126416
Alignment:
| Q |
1 |
agcacagacgcggatatgctgggactttgtctgactgggctgtataacattttaaaggcaggagaaatttacaaggataag |
81 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46126336 |
agcacagacgcgactatgctgacactttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaaggataag |
46126416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 46705372 - 46705414
Alignment:
| Q |
350 |
tgcacacttgtatatgatcactggtgtgtacaatctaagaggc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46705372 |
tgcacacttgtatatgatcactggtgtgaacaatctaagaggc |
46705414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 46126452 - 46126498
Alignment:
| Q |
81 |
gattaaagagtgtgcaggattggataagattaaaagattgcaaagct |
127 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46126452 |
gattgaagagtgtgcaggattggataagattgcaagattgcaaagct |
46126498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 46705060 - 46705145
Alignment:
| Q |
2 |
gcacagacgcggatatgctgggactttgtctgactgggctgtat------aacattttaaaggcaggagaaatttacaaggataag |
81 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46705060 |
gcacagacgcgtctatgctggaacgttgtctgactgggctgaaactgaaaaacattttaaaggcaggagaaattaacaaggataag |
46705145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University