View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_low_17 (Length: 412)
Name: NF13672_low_17
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 3 - 393
Target Start/End: Complemental strand, 45832903 - 45832515
Alignment:
| Q |
3 |
gatgtcgaagaatatcaagtacaaaataagttcaaaggctctcataaggagtcaatgattatctttgaaaaagtatccctttatgctaggaccaagtcat |
102 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| |
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| T |
45832903 |
gatgtcaaagaaagtcaagtacaaaataagttcaaaggctgtcataaggaatcaatgataatctttgaaaaagtatcattttatgctaggaccaagccat |
45832804 |
T |
|
| Q |
103 |
cactactcaggttatgtaaatgctttcactacttaggttatgtaaatttatttcactaaagagaaatcacaaataaatctatcctcttttcaattcacca |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45832803 |
cactactcaggttatgtaaatgctttcactacttaggttatgtaaatttatttcactaaagagaa-tcacaaataaatctatcctcttttcaattcacca |
45832705 |
T |
|
| Q |
203 |
cttatatttcaaatagttaaaggcaatggagcactctcttttcaattgaatcatactcaagacaaaacaaaaagaattacactcccatttcagacagtgt |
302 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45832704 |
cttatatttcaaataattaaaggcaatggagcactctctttttaattgaatcatactcaagataaaacaaaaagaattacactcccatttcagacagtgt |
45832605 |
T |
|
| Q |
303 |
tgaaaagtaaatatgtttccttaattgctgaaaaccatcccaagtaaaatatattattatacagctccatacaaaaacataaagaacaaaa |
393 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
45832604 |
tgaaaagtaaatatgtttccttaattgctgaaaaccatcccaagtaaaaaatattattatacagctccatac-aaaacataaagaacaaaa |
45832515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 123 - 328
Target Start/End: Original strand, 32552516 - 32552724
Alignment:
| Q |
123 |
tgctttcactacttaggttatgtaaatttatttcactaaagagaaatcacaaataaatctatcctcttttcaattcaccacttatatttcaaatagttaa |
222 |
Q |
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||||||||||||| ||||||||||||||| ||||||| | ||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
32552516 |
tgctttcactactcaggttatgtaaatttgtttcactca-gagaa-tcacaaataaatctaccctcttttcaattcaccacttttatttcaaatagaggg |
32552613 |
T |
|
| Q |
223 |
aggcaatgga--gcact---ctcttttcaattgaatcatactcaagacaaaacaaaaagaattacactcccatttcagacagtgttgaaaagtaaatatg |
317 |
Q |
| |
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| |||| | ||| ||||||| | ||||||||||||||||||||| ||||||||||||| | | ||||||| |||||||||||||||||||| |
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| T |
32552614 |
aatcaattcaagttacttgactcttttaacttgaatcatactcaagacaaatcaaaaagaattaccgtacgatttcagctagtgttgaaaagtaaatatg |
32552713 |
T |
|
| Q |
318 |
tttccttaatt |
328 |
Q |
| |
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||| ||||||| |
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|
| T |
32552714 |
tttgcttaatt |
32552724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 393
Target Start/End: Complemental strand, 32752634 - 32752474
Alignment:
| Q |
234 |
cactctcttttcaattgaatcatactcaagacaaaacaaaaagaattacactcccatttcagacagtgttgaaaagtaaatatgtttccttaattgctga |
333 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| | | |||| || |||||||||||||||||||||| |||||| | |||| |
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| T |
32752634 |
cactttcttttcaattgaatcatactcaagacaaaacaaaaagaattattgtgcgatttgagctagtgttgaaaagtaaatatgttaccttaactactga |
32752535 |
T |
|
| Q |
334 |
aaaccatcccaagtaaaatatattattatac--agctccatacaaaaacataaagaacaaaa |
393 |
Q |
| |
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||| ||||| ||||||| | || ||||||| ||||||| || |||||||||||||||||| |
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|
| T |
32752534 |
aaaatatcccgagtaaaaaagatcattatacatagctccagac-aaaacataaagaacaaaa |
32752474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 32750102 - 32749988
Alignment:
| Q |
241 |
ttttcaattgaatcatactcaagacaaaacaaaaagaattacactcccatttcagacagtgttgaaaagtaaatatgtttccttaattgctgaaaaccat |
340 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||| | | ||||||| | ||||||||||||||||||||||||||||||||||||| || |
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| T |
32750102 |
ttttcaattgaatcatactcaagataaaacaaaaataattattgtgcaatttcagctaatgttgaaaagtaaatatgtttccttaattgctgaaaattat |
32750003 |
T |
|
| Q |
341 |
cccaagtaaaatata |
355 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
32750002 |
ccatagtaaaatata |
32749988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 336
Target Start/End: Complemental strand, 32756309 - 32756068
Alignment:
| Q |
102 |
tcactactcaggttatgtaaatgctttcactacttaggttatgtaaatttatttcactaaagagaaatcacaaataaatctatcctcttttcaattcacc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||| | ||| ||||||||||||| |
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| T |
32756309 |
tcactactcaggttatgtaaatgctttcactacttaagttaattaaatttatttcaccca--caaaatcacaaataaatatgccctattttcaattcacc |
32756212 |
T |
|
| Q |
202 |
acttatatttcaa--atagttaaagg---caatggagcactctcttttcaattgaatcatactcaagacaaaacaaaa-aga---attacactcccattt |
292 |
Q |
| |
|
||| ||||| || | || || || |||| | |||||||||||||||||||||||||| ||||||||| |||| | | || | | | |||| |
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|
| T |
32756211 |
actcttattttaattacagggaatggattcaattcaccactctcttttcaattgaatcatacttaagacaaaaaaaaatatatatatcattgtgcgattt |
32756112 |
T |
|
| Q |
293 |
cagacagtgttgaaaagtaaatatgtttccttaattgctgaaaa |
336 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32756111 |
cagctagtgttgaaaagtaaatatgtttccttaattgctgaaaa |
32756068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 32549201 - 32549270
Alignment:
| Q |
300 |
tgttgaaaagtaaatatgtttccttaattgctgaaaaccatcccaagtaaaatatattattatacagctc |
369 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||| |||||||||||||| | || || ||||||||| |
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|
| T |
32549201 |
tgttaaaaagtaaatatgtttatttaaatgctgaaaatcatcccaagtaaaagaaatcatcatacagctc |
32549270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 32744217 - 32744166
Alignment:
| Q |
300 |
tgttgaaaagtaaatatgtttccttaattgctgaaaaccatcccaagtaaaa |
351 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| ||||| ||||||| |
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|
| T |
32744217 |
tgttgaaaagtaaatatgtttcttcaattgctgaaaatcatccgcagtaaaa |
32744166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 32655295 - 32655341
Alignment:
| Q |
307 |
aagtaaatatgtttccttaattgctgaaaaccatcccaagtaaaata |
353 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||||| ||||||||| |
|
|
| T |
32655295 |
aagtaaatatgtttcttcaattgctgaaaatcatccccagtaaaata |
32655341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 17584288 - 17584220
Alignment:
| Q |
300 |
tgttgaaaagtaaatatgtttccttaattgctgaaaaccatcccaagtaaaatatattattatacagctc |
369 |
Q |
| |
|
||||| |||||||||| ||||| | |||||||||||| |||||| ||||||| |||| |||||||||||| |
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|
| T |
17584288 |
tgttggaaagtaaataggtttcttcaattgctgaaaatcatccccagtaaaa-atataattatacagctc |
17584220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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