View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13672_low_18 (Length: 411)

Name: NF13672_low_18
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13672_low_18
NF13672_low_18
[»] chr2 (5 HSPs)
chr2 (14-202)||(45622936-45623111)
chr2 (222-285)||(45623235-45623296)
chr2 (225-278)||(9809470-9809522)
chr2 (222-278)||(16248453-16248507)
chr2 (362-394)||(45623364-45623396)
[»] chr8 (4 HSPs)
chr8 (222-285)||(7935038-7935101)
chr8 (222-285)||(34578582-34578645)
chr8 (346-394)||(7934929-7934977)
chr8 (346-394)||(34578706-34578754)
[»] chr7 (1 HSPs)
chr7 (222-269)||(27128904-27128951)
[»] chr4 (1 HSPs)
chr4 (222-278)||(31888821-31888875)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 45622936 - 45623111
Alignment:
Q  14 acatcatcatgcgaccagagtctggtgaaagggccgtcgaagtgaagcaacgaaaggacggtggcagccaggtcataattgctctttcatgttggtagta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622936 acatcatcatgcgaccagagtctggtgaaagggccgtcgaagtgaagcaacgaaaggacggtggcagccaggtcataattgctctttcatgttggtagta 45623035  T
Q  114 aaatatataataattaattagctttgtatattagctttgtcaatattattttttactatagtatatactaccgtataaagcatcaccca 202  Q
    ||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45623036 aaatatataataatta-------------attagctttgtcaatattattttttactatagtatatactaccgtataaagcatcaccca 45623111  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 45623235 - 45623296
Alignment:
Q  222 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcct 285  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  45623235 ttgatctaaaggttgagacaca--gagggaagagaaaattaggggagagagaaaagtctatcct 45623296  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 9809470 - 9809522
Alignment:
Q  225 atctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagt 278  Q
    |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  9809470 atctaaaggttgagacacaa-gagggaagagaaaattagaggagagagaaaagt 9809522  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 16248453 - 16248507
Alignment:
Q  222 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagt 278  Q
    ||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||||||    
T  16248453 ttgatctaaaggttgagacgca--gagggaagagaaaattagaggagagagaaaagt 16248507  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 45623364 - 45623396
Alignment:
Q  362 ccatagccacaaataatctctcactttgagttt 394  Q
    ||||||||||||||||||||||| |||||||||    
T  45623364 ccatagccacaaataatctctcattttgagttt 45623396  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 7935101 - 7935038
Alignment:
Q  222 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcct 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7935101 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagagagaaaagtctatcct 7935038  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 34578582 - 34578645
Alignment:
Q  222 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcct 285  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  34578582 ttgatctaaaggttgagacacaaagagggaagagaaaattaagggagagagaaaagtctatcct 34578645  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 7934977 - 7934929
Alignment:
Q  346 acagtttccataggaaccatagccacaaataatctctcactttgagttt 394  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  7934977 acaggttccataggaaccatatccacaaataatctctcactttgagttt 7934929  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 34578706 - 34578754
Alignment:
Q  346 acagtttccataggaaccatagccacaaataatctctcactttgagttt 394  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  34578706 acaggttccataggaactatagccacaaataatctctcactttgagttt 34578754  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 27128951 - 27128904
Alignment:
Q  222 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggaga 269  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||    
T  27128951 ttgatctaaaggttgagacacaaagaggaaagagaaaattagaggaga 27128904  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 31888875 - 31888821
Alignment:
Q  222 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagt 278  Q
    ||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||||||    
T  31888875 ttgatctaaaggttgagacgca--gagggaagagaaaattagaggagagagaaaagt 31888821  T

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