View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_low_2 (Length: 623)
Name: NF13672_low_2
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 391
Target Start/End: Complemental strand, 38947387 - 38947024
Alignment:
| Q |
30 |
ctcattttttgaccaccaatcaaatatatcttaatcttaatcttgatgcatttttaatttgattacacttcttggagctttgttttcaacctatgtaagn |
129 |
Q |
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| T |
38947387 |
ctcatttttagaccaccaatcaaatatatcttaatcttaatcttgatgcatttttaatttgattacacttcttggagctttgttttcaacctatgtaagt |
38947288 |
T |
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| Q |
130 |
nnnnnnn--ctccattattaagcctgcatgttcttttgttaattggttaaatattgttgatgttttcttggtttctttacacaatatctactcaaatttg |
227 |
Q |
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| T |
38947287 |
tttttttttctccattattaagcctgcatgttcttttgttaattggttaaatattgttgatgttttcttggtttctttacacaatatctactcaaatttg |
38947188 |
T |
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| Q |
228 |
gcatggtttctattgctaatatacattagtgtgacttctttgagaggtaggcaactaatgattttattctaatttttcccctccatcattttgaaactca |
327 |
Q |
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| T |
38947187 |
gcatggtttctattgctaatatacattagtgtgacttctttgagaggtaggcaactaatgattttattctaatttttcgcctctatcattttgaaactca |
38947088 |
T |
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| Q |
328 |
atcaaacatatatgataacacttttcaaatttcaaaattttcctccaatcattttgaaactcaa |
391 |
Q |
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| T |
38947087 |
atcaaacatacatgataacacttttcaaatttcaaatttttcctccaatcattttgaaactcaa |
38947024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 460 - 612
Target Start/End: Complemental strand, 38947025 - 38946873
Alignment:
| Q |
460 |
aatcaacgtacaatttgcattgaaggacataataaaatcgaaattacacattttcatgtaaataaatgttatgtatccttagattgagtgaaaaagtata |
559 |
Q |
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| T |
38947025 |
aatcaacgtacaatttgcattgaaggacataataaaatcgaaattacacattttcatgtaaataaatgttatgtatcctcagattgagtgaaaaagtata |
38946926 |
T |
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| Q |
560 |
cacgataggataagtatataaatcaattagatgaacgaaggcggttgatgatg |
612 |
Q |
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| T |
38946925 |
cacgataggataagtatataaatcaattagatgaacgaaggcggttgatgatg |
38946873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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