View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_low_27 (Length: 336)
Name: NF13672_low_27
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 45832513 - 45832201
Alignment:
| Q |
8 |
tcaaatccttattaagaaacgcaaaagtcaaacacttacttatcaatgatgnnnnnnnctctaataaaaggggggccaacatccagattgatgggttcaa |
107 |
Q |
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| T |
45832513 |
tcaaatccttattaagaaacgcaaaagtcaaacacttacttatcaatgatgtttttttctctaataatagggaggccaacatccagattgatgggttcaa |
45832414 |
T |
|
| Q |
108 |
ttgttgacaaaattgnnnnnnnnttcaactaacttagaatccaaatcaagtttacatgattaatgactttagattaaggaactttagtttacatgaaact |
207 |
Q |
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| T |
45832413 |
ttgttgacaaaattgaaaaaaaaatcaactaacttggaatccaaatcaagtttacatgattaatgactttagattaaggaactttagtttacatgaaact |
45832314 |
T |
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| Q |
208 |
tttcaaatctcaaatatcaatctcacaaattttatgtaaagcataaaaattctgatataattcttcatagatcttttaatttgtaaactttttctttcaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45832313 |
tttcaaatctcaaatatcaatctcacaaattttatgtaaagcataaaaattctgatataattcttcatagatcttttaatttgtaaactttttctttcaa |
45832214 |
T |
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| Q |
308 |
gctgcataatcat |
320 |
Q |
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||||||||||||| |
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| T |
45832213 |
gctgcataatcat |
45832201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 320
Target Start/End: Original strand, 30178175 - 30178275
Alignment:
| Q |
220 |
aatatcaatctcacaaattttatgtaaa-gcataaaaattctgatataattcttcatagatcttttaatttgtaaactttttctttcaagctgcataatc |
318 |
Q |
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|||||||||| | ||||||||| |||| || |||||| |||||||||||||||||||||| || ||| ||||||| |||||||||||| ||||| |||| |
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| T |
30178175 |
aatatcaatcacccaaattttacttaaaagcctaaaaaatctgatataattcttcatagatattctaa-ttgtaaattttttctttcaaactgcaaaatc |
30178273 |
T |
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| Q |
319 |
at |
320 |
Q |
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|| |
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| T |
30178274 |
at |
30178275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 10664094 - 10664152
Alignment:
| Q |
261 |
gatataattcttcatagatcttttaatttgtaaactttttctttcaagctgcataatcat |
320 |
Q |
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| T |
10664094 |
gatataattcttcatagatattctaatt-gtaaattttttctttcaagctgcaaaatcat |
10664152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 32749950 - 32749912
Alignment:
| Q |
5 |
aagtcaaatccttattaagaaacgcaaaagtcaaacact |
43 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
32749950 |
aagtcaaatccttattaagaaatgcaaaagtcaaacact |
32749912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 32752475 - 32752437
Alignment:
| Q |
5 |
aagtcaaatccttattaagaaacgcaaaagtcaaacact |
43 |
Q |
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||||||||||||||||| |||| |||||||||||||||| |
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| T |
32752475 |
aagtcaaatccttattacgaaatgcaaaagtcaaacact |
32752437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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