View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_low_29 (Length: 320)
Name: NF13672_low_29
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 129 - 302
Target Start/End: Complemental strand, 15183590 - 15183416
Alignment:
| Q |
129 |
ggaactactctatagaaaagagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggaggagagatatggtagagtagctcagaattcga |
228 |
Q |
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| T |
15183590 |
ggaactactctatagaaaagagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggagaagagatatggtattgtagttcagaatccga |
15183491 |
T |
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| Q |
229 |
atctg-tttaagcttggccataaaatccgcacattgacttccctaaaagtgtggcaaactgttacattaccttac |
302 |
Q |
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| T |
15183490 |
atctgcttcaagcttggccataaaatccacacattgacttccctaagagtgtggcaaactgttacattaccttac |
15183416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 15183697 - 15183637
Alignment:
| Q |
19 |
atcatagcttaactagaaatactccatcacaatcttaattttttttggttacaaggcaaat |
79 |
Q |
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| T |
15183697 |
atcatagcttaactagaaatactccatcacaatcttatttttttttggttacaaggcaaat |
15183637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 300
Target Start/End: Complemental strand, 14251769 - 14251611
Alignment:
| Q |
147 |
agagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggaggagagatatggtagagtagctcagaattcgaatctg-tttaagcttggc |
245 |
Q |
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| T |
14251769 |
agagagttccaactgcgtccatcctgaggagatacaagaaatccgttggaggagagatatggtagagcagcttagtatccgaacctgctctaagcttggc |
14251670 |
T |
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| Q |
246 |
cataaaatccgcacattgact----tccctaaaagtgtggcaaactgttacattacctt |
300 |
Q |
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| T |
14251669 |
cataaattccactcactgattactctatctaagagtgtggcaaactgttacattacctt |
14251611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 24531641 - 24531766
Alignment:
| Q |
129 |
ggaactactctatagaaaagagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggaggagagatatggtagagtagctcagaattcga |
228 |
Q |
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||||||||||| ||||| ||| ||||| | | ||| |||| ||||||||| |||||||| ||||||||||||| ||||||||| ||||||| || ||| |
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| T |
24531641 |
ggaactactctctagaatagacagttccaactacgtacatcctgaggaggttcaagagattatctggaggagagacatggtagagcagctcagtatccga |
24531740 |
T |
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| Q |
229 |
atctg-tttaagcttggccataaaat |
253 |
Q |
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| T |
24531741 |
acctgcttcaagcttgaccaaaaaat |
24531766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 257
Target Start/End: Original strand, 43398900 - 43399029
Alignment:
| Q |
129 |
ggaactactctatagaaaagagagttcaagccgcgttcatcttgaggaggtgcaagagatcctctggaggagagatatggtagagtagctcagaattcga |
228 |
Q |
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||||||||||| ||||| ||||||||| | |||||| ||| | |||| || ||||||||| || ||||||| ||||||||||| | |||| |||||| |
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| T |
43398900 |
ggaactactctctagaatagagagttccaaccgcgtccattctaaggaagttcaagagatcaactagaggagaaatatggtagagcaactcaacattcga |
43398999 |
T |
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| Q |
229 |
atctg-tttaagcttggccataaaatccgc |
257 |
Q |
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| T |
43399000 |
acttgctttaagtttgggtataaaatccgc |
43399029 |
T |
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