View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13672_low_35 (Length: 243)

Name: NF13672_low_35
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13672_low_35
NF13672_low_35
[»] chr7 (4 HSPs)
chr7 (15-176)||(6199004-6199166)
chr7 (15-176)||(9066713-9066874)
chr7 (178-216)||(362042-362080)
chr7 (177-212)||(9066561-9066596)
[»] chr8 (9 HSPs)
chr8 (16-181)||(17008132-17008297)
chr8 (16-181)||(17540653-17540818)
chr8 (177-216)||(17007984-17008023)
chr8 (177-216)||(17540927-17540966)
chr8 (182-216)||(14366331-14366365)
chr8 (183-216)||(16083415-16083448)
chr8 (183-216)||(16084822-16084855)
chr8 (183-216)||(16086229-16086262)
chr8 (183-216)||(16087636-16087669)
[»] scaffold0208 (1 HSPs)
scaffold0208 (16-165)||(1126-1273)
[»] chr5 (1 HSPs)
chr5 (177-216)||(40572198-40572237)
[»] chr4 (3 HSPs)
chr4 (177-216)||(23878909-23878948)
chr4 (178-216)||(10755163-10755201)
chr4 (178-216)||(10968932-10968970)
[»] chr3 (4 HSPs)
chr3 (177-216)||(10776764-10776803)
chr3 (178-216)||(26907100-26907138)
chr3 (182-216)||(8856860-8856894)
chr3 (178-216)||(17593879-17593917)
[»] chr6 (2 HSPs)
chr6 (178-216)||(11231506-11231544)
chr6 (182-216)||(19577180-19577214)
[»] chr2 (1 HSPs)
chr2 (183-216)||(23692931-23692964)
[»] chr1 (2 HSPs)
chr1 (177-214)||(19913704-19913741)
chr1 (183-216)||(24280843-24280876)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 6199166 - 6199004
Alignment:
Q  15 cagagaccgtgcgtgaatctccttt-agataaaaggatagggattaaccgataacaaaattagaaagacacaacctgatgtgatatcatgatccctccgc 113  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6199166 cagagaccgtgcgtgaatctctttttagatataaggatagggattaaccgataacaaatttagaaagacacaacctgatgtgatatcatgatccctccgc 6199067  T
Q  114 caccgatgctcggaattttgatagttgcctttgccgtattcttgggaagaggacagatgaata 176  Q
    |||||||||||| | ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  6199066 caccgatgctcgaagttttgatagctgcctttgtcgtattcttgggaagaggacagatgaata 6199004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 9066874 - 9066713
Alignment:
Q  15 cagagaccgtgcgtgaatctcctttagataaaaggatagggattaaccgataacaaaattagaaagacacaacctgatgtgatatcatgatccctccgcc 114  Q
    |||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9066874 cagagaccatgcatgaatctcttttagatataaggatagggattaaccgataacaaaattagaaagacagaacctgatgtgatatcatgatccctccgcc 9066775  T
Q  115 accgatgctcggaattttgatagttgcctttgccgtattcttgggaagaggacagatgaata 176  Q
    ||||||||||||| |||||| || |||||||| |||||||||||| ||||||||||||||||    
T  9066774 accgatgctcggagttttgacagctgcctttgtcgtattcttgggtagaggacagatgaata 9066713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 362042 - 362080
Alignment:
Q  178 tgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  362042 tgagtgtggtctaggttagttttaccgtttcccacagac 362080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 9066596 - 9066561
Alignment:
Q  177 gtgagtgtggtctaggttagttttaccatttcccac 212  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9066596 gtgagtgtggtctaggttagttttaccgtttcccac 9066561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 17008297 - 17008132
Alignment:
Q  16 agagaccgtgcgtgaatctcctttagataaaaggatagggattaaccgataacaaaattagaaagacacaacctgatgtgatatcatgatccctccgcca 115  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  17008297 agagaccgtgcgtgaatctcttttagatataaggatagggattaactgataacaaagttagaaagacacaacctgatgtgatatcatgatccctctgcca 17008198  T
Q  116 ccgatgctcggaattttgatagttgcctttgccgtattcttgggaagaggacagatgaatagtgag 181  Q
    |||||||||| | |||||| || |  ||||| |||||||||||||||||| |||||||||| ||||    
T  17008197 ccgatgctcgaagttttgacagctctctttgtcgtattcttgggaagagggcagatgaataatgag 17008132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 17540653 - 17540818
Alignment:
Q  16 agagaccgtgcgtgaatctcctttagataaaaggatagggattaaccgataacaaaattagaaagacacaacctgatgtgatatcatgatccctccgcca 115  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  17540653 agagaccgtgcgtgaatctcttttagatataaggatagggattaactgataacaaagttagaaagacacaacctgatgtgatatcatgatccctctgcca 17540752  T
Q  116 ccgatgctcggaattttgatagttgcctttgccgtattcttgggaagaggacagatgaatagtgag 181  Q
    |||||||||| | |||||| || |  ||||| |||||||||||||||||| |||||||||| ||||    
T  17540753 ccgatgctcgaagttttgacagctctctttgtcgtattcttgggaagagggcagatgaataatgag 17540818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 17008023 - 17007984
Alignment:
Q  177 gtgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  17008023 gtgagtgtggtctaggttagttttaccgtttcccacagac 17007984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 17540927 - 17540966
Alignment:
Q  177 gtgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  17540927 gtgagtgtggtctaggttagttttaccgtttcccacagac 17540966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 14366365 - 14366331
Alignment:
Q  182 tgtggtctaggttagttttaccatttcccacagac 216  Q
    |||||||||||||||||||||| ||||||||||||    
T  14366365 tgtggtctaggttagttttaccttttcccacagac 14366331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 16083415 - 16083448
Alignment:
Q  183 gtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||| ||||||||||||    
T  16083415 gtggtctaggttagttttaccttttcccacagac 16083448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 16084822 - 16084855
Alignment:
Q  183 gtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||| ||||||||||||    
T  16084822 gtggtctaggttagttttaccttttcccacagac 16084855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 16086229 - 16086262
Alignment:
Q  183 gtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||| ||||||||||||    
T  16086229 gtggtctaggttagttttaccttttcccacagac 16086262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 16087636 - 16087669
Alignment:
Q  183 gtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||| ||||||||||||    
T  16087636 gtggtctaggttagttttaccttttcccacagac 16087669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 1126 - 1273
Alignment:
Q  16 agagaccgtgcgtgaatctcctttagataaaaggatagggattaaccgataacaaaattagaaagacacaacctgatgtgatatcatgatccctccgcca 115  Q
    ||||||||| |||||||||| |||| ||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  1126 agagaccgtccgtgaatctcttttatataa--ggatagggattaaccgataacaaagttagaaagacacaacctgatgtgatatcataatccctccgcca 1223  T
Q  116 ccgatgctcggaattttgatagttgcctttgccgtattcttgggaagagg 165  Q
    ||||| || ||| |||||| || |||||| | ||||||||||||||||||    
T  1224 ccgatacttggagttttgacagctgccttagtcgtattcttgggaagagg 1273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 40572198 - 40572237
Alignment:
Q  177 gtgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  40572198 gtgagtgtggtctaggttagttttaccgtttcccacagac 40572237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 23878948 - 23878909
Alignment:
Q  177 gtgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  23878948 gtgagtgtggtctaggttagttttaccgtttcccacagac 23878909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 10755201 - 10755163
Alignment:
Q  178 tgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  10755201 tgagtgtggtctaggttagttttaccgtttcccacagac 10755163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 10968970 - 10968932
Alignment:
Q  178 tgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  10968970 tgagtgtggtctaggttagttttaccgtttcccacagac 10968932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 10776764 - 10776803
Alignment:
Q  177 gtgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  10776764 gtgagtgtggtctaggttagttttaccgtttcccacagac 10776803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 26907100 - 26907138
Alignment:
Q  178 tgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  26907100 tgagtgtggtctaggttagttttaccttttcccacagac 26907138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 8856860 - 8856894
Alignment:
Q  182 tgtggtctaggttagttttaccatttcccacagac 216  Q
    |||||||||||||||||||||| ||||||||||||    
T  8856860 tgtggtctaggttagttttaccttttcccacagac 8856894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 17593917 - 17593879
Alignment:
Q  178 tgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  17593917 tgagtgcggtctaggttagttttaccttttcccacagac 17593879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 11231544 - 11231506
Alignment:
Q  178 tgagtgtggtctaggttagttttaccatttcccacagac 216  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  11231544 tgagtgtggtctaggttaattttaccttttcccacagac 11231506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 19577180 - 19577214
Alignment:
Q  182 tgtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||||||| |||||||||    
T  19577180 tgtggtctaggttagttttaccattacccacagac 19577214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 23692964 - 23692931
Alignment:
Q  183 gtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||| ||||||||||||    
T  23692964 gtggtctaggttagttttaccttttcccacagac 23692931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 19913704 - 19913741
Alignment:
Q  177 gtgagtgtggtctaggttagttttaccatttcccacag 214  Q
    ||||||||||||||||||||||||||| || |||||||    
T  19913704 gtgagtgtggtctaggttagttttaccgttccccacag 19913741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 24280843 - 24280876
Alignment:
Q  183 gtggtctaggttagttttaccatttcccacagac 216  Q
    ||||||||||||||||||||| ||||||||||||    
T  24280843 gtggtctaggttagttttaccttttcccacagac 24280876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University