View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_low_38 (Length: 230)
Name: NF13672_low_38
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_38 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 852697 - 852926
Alignment:
| Q |
1 |
tcatcatcatctgttcatagcttaggatgataatcctttgttatctgaaatcaatagaaattttttcaacaggtgtgcttgcaagttactccatttgcta |
100 |
Q |
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| T |
852697 |
tcatcatcatctgttcatagcttaggatgataatcctttgttatctgaaatcaatagaaattttttcaacaggtgtgcttgcaagttactccatttgcta |
852796 |
T |
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| Q |
101 |
tgaaatgcaaaatcatttgtaaaagttctaataagctcttctaaacactacctaaagtctaaaaaaggtggggacttgaggaggaaaatggtgctacata |
200 |
Q |
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| T |
852797 |
tgaaatgcaaaatcatttataaaagttctaataagctcttctaaacactacctaaagtctaaaaaaggtggggacttgaggaggaaaatggtgttacata |
852896 |
T |
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| Q |
201 |
catgtgatagccgcagttgctacccttgtt |
230 |
Q |
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| T |
852897 |
catgtgatagccgcagttgctacccttgtt |
852926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 848476 - 848516
Alignment:
| Q |
185 |
aaaatggtgctacatacatgtgatagccgcagttgctaccc |
225 |
Q |
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| T |
848476 |
aaaatggtgctacatacatatgatagccgcagttgctaccc |
848516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 847770 - 847828
Alignment:
| Q |
1 |
tcatcatcatctgttcatagcttaggatgataatcctttgttatctgaaatcaatagaa |
59 |
Q |
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| T |
847770 |
tcatcatcgtctcttcattgcttaggatgataatccttcgtcatttgaaataaatagaa |
847828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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