View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13672_low_39 (Length: 225)

Name: NF13672_low_39
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13672_low_39
NF13672_low_39
[»] chr6 (28 HSPs)
chr6 (120-211)||(26059348-26059439)
chr6 (120-211)||(26079318-26079409)
chr6 (1-83)||(25486957-25487039)
chr6 (1-83)||(26146555-26146637)
chr6 (1-94)||(26059582-26059675)
chr6 (1-94)||(26079552-26079645)
chr6 (51-128)||(26059455-26059532)
chr6 (51-128)||(26079425-26079502)
chr6 (1-65)||(25986741-25986805)
chr6 (120-211)||(25486796-25486904)
chr6 (120-211)||(25514285-25514367)
chr6 (1-94)||(27079021-27079114)
chr6 (120-167)||(26146455-26146502)
chr6 (1-51)||(25514427-25514477)
chr6 (97-211)||(25548397-25548534)
chr6 (56-126)||(26852225-26852295)
chr6 (14-83)||(27423901-27423970)
chr6 (1-85)||(27661940-27662024)
chr6 (1-54)||(27715039-27715092)
chr6 (126-167)||(27715139-27715180)
chr6 (84-128)||(25514383-25514427)
chr6 (46-85)||(27703284-27703323)
chr6 (182-211)||(25583127-25583156)
chr6 (164-193)||(26146387-26146416)
chr6 (126-167)||(27682475-27682516)
chr6 (51-92)||(27703382-27703423)
chr6 (123-167)||(27078820-27078864)
chr6 (119-167)||(27703471-27703519)
[»] chr8 (2 HSPs)
chr8 (27-94)||(29270329-29270396)
chr8 (126-167)||(29270443-29270484)
[»] scaffold0003 (1 HSPs)
scaffold0003 (14-83)||(63393-63462)
[»] scaffold0349 (2 HSPs)
scaffold0349 (126-167)||(16764-16805)
scaffold0349 (1-54)||(16852-16905)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 26059439 - 26059348
Alignment:
Q  120 tcctcctcctcccctttctctgaaactcccacttccaccaatctttgcataaattgtgataatgaaggatcaatgaatctcacacccccctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26059439 tcctcctcctcccctttctctgaaactcccacttccaccaatctttgcataaattgtgataatgaaggatcaatgaatctcacacccccctc 26059348  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 26079409 - 26079318
Alignment:
Q  120 tcctcctcctcccctttctctgaaactcccacttccaccaatctttgcataaattgtgataatgaaggatcaatgaatctcacacccccctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26079409 tcctcctcctcccctttctctgaaactcccacttccaccaatctttgcataaattgtgataatgaaggatcaatgaatctcacacccccctc 26079318  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 25487039 - 25486957
Alignment:
Q  1 agcacaaacctgcaatgttgagattgagagaataacaggaagacggttaactttatgatggacctagactaaggaatgtaccc 83  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25487039 agcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctagactaaggaatgtaccc 25486957  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 26146637 - 26146555
Alignment:
Q  1 agcacaaacctgcaatgttgagattgagagaataacaggaagacggttaactttatgatggacctagactaaggaatgtaccc 83  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26146637 agcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctagactaaggaatgtaccc 26146555  T

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Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 26059675 - 26059582
Alignment:
Q  1 agcacaaacctgcaatgttgagattgagagaataacaggaagacggttaactttatgatggacctagactaaggaatgtaccccaagtctttct 94  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||  |||||||    
T  26059675 agcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatctttct 26059582  T

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Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 26079645 - 26079552
Alignment:
Q  1 agcacaaacctgcaatgttgagattgagagaataacaggaagacggttaactttatgatggacctagactaaggaatgtaccccaagtctttct 94  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||  |||||||    
T  26079645 agcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatctttct 26079552  T

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Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 26059532 - 26059455
Alignment:
Q  51 ctttatgatggacctagactaaggaatgtaccccaagtctttctagtattaggattcttcaatatgacatcctcctcc 128  Q
    |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  26059532 ctttttgatgcacctagactaaggaatgtaccccaagtctttctattattaggattcttcaatattacatcctcctcc 26059455  T

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Target: chr6; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 26079502 - 26079425
Alignment:
Q  51 ctttatgatggacctagactaaggaatgtaccccaagtctttctagtattaggattcttcaatatgacatcctcctcc 128  Q
    |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  26079502 ctttttgatgcacctagactaaggaatgtaccccaagtctttctattattaggattcttcaatattacatcctcctcc 26079425  T

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Target: chr6; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25986805 - 25986741
Alignment:
Q  1 agcacaaacctgcaatgttgagattgagagaataacaggaagacggttaactttatgatggacct 65  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25986805 agcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacct 25986741  T

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Target: chr6; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 25486904 - 25486796
Alignment:
Q  120 tcctcctcctcccctttctctgaaactcccacttccaccaatctttg-----------------cataaattgtgataatgaaggatcaatgaatctcac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||    
T  25486904 tcctcctcctcccctttctctgaaactcccacttccaccaatctttgcttttttagaggaggcacataaattgtgataatgaaggatcaatgaatctcac 25486805  T
Q  203 acccccctc 211  Q
    |||||||||    
T  25486804 acccccctc 25486796  T

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Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 25514367 - 25514285
Alignment:
Q  120 tcctcctcctcccctttctctgaaactcccacttccaccaatctttgcataaattgtgataatgaaggatcaatgaatctcacacccccctc 211  Q
    |||||||||||||||||||||||||||||||||||||||||| |         ||||||||||||||||||||| |||||||||||||||||    
T  25514367 tcctcctcctcccctttctctgaaactcccacttccaccaattt---------ttgtgataatgaaggatcaattaatctcacacccccctc 25514285  T

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Target: chr6; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 27079114 - 27079021
Alignment:
Q  1 agcacaaacctgcaatgttgagattgagagaataacaggaagacggttaactttatgatggacctagactaaggaatgtaccccaagtctttct 94  Q
    ||||||||||| |||||||||||||||||||||||||  |||| || |||| | || ||| |||||||| ||||||||||||||| ||||||||    
T  27079114 agcacaaaccttcaatgttgagattgagagaataacaacaagatggctaacctcataatgcacctagacaaaggaatgtaccccatgtctttct 27079021  T

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Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 26146502 - 26146455
Alignment:
Q  120 tcctcctcctcccctttctctgaaactcccacttccaccaatctttgc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26146502 tcctcctcctcccctttctctgaaactcccacttccaccaatctttgc 26146455  T

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Target: chr6; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25514477 - 25514427
Alignment:
Q  1 agcacaaacctgcaatgttgagattgagagaataacaggaagacggttaac 51  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25514477 agcacaaacctgcaatgttgagattgagagaataacaagaagacggttaac 25514427  T

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Target: chr6; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 25548534 - 25548397
Alignment:
Q  97 tattaggattcttcaatatgacatcctcct--------cctcccctttctctgaaactcccacttccaccaatcttt---------------gcataaat 173  Q
    ||||||||||||||||||| ||||||||||        |||||||||||||||||||||||||||||||||||||||               ||||||||    
T  25548534 tattaggattcttcaatattacatcctcctaaaaccctcctcccctttctctgaaactcccacttccaccaatctttgctttttttgaggaggcataaat 25548435  T
Q  174 tgtgataatgaaggatcaatgaatctcacacccccctc 211  Q
    ||| ||||||||||||||||||||||||||| ||||||    
T  25548434 tgtaataatgaaggatcaatgaatctcacactcccctc 25548397  T

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Target: chr6; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 26852295 - 26852225
Alignment:
Q  56 tgatggacctagactaaggaatgtaccccaagtctttctagtattaggattcttcaatatgacatcctcct 126  Q
    ||||| |||||||||||||||||||||||||||||||| | |||||| ||| |||||||| ||||||||||    
T  26852295 tgatgcacctagactaaggaatgtaccccaagtctttcaactattagtattgttcaatatcacatcctcct 26852225  T

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Target: chr6; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 27423901 - 27423970
Alignment:
Q  14 aatgttgagattgagagaataacaggaagacggttaactttatgatggacctagactaaggaatgtaccc 83  Q
    ||||||||||||||||||||||||  ||  ||||||||||||||||| |||||||| |||||||||||||    
T  27423901 aatgttgagattgagagaataacaacaaagcggttaactttatgatgaacctagaccaaggaatgtaccc 27423970  T

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Target: chr6; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 27661940 - 27662024
Alignment:
Q  1 agcacaaacctgcaatgttgagattgagagaataacaggaagacggttaactttatgatggacctagactaaggaatgtacccca 85  Q
    ||||||||||||||| |||||||||||||| ||||||  ||||||||||||||||||  | |||| ||  |||||||||||||||    
T  27661940 agcacaaacctgcaaagttgagattgagaggataacaacaagacggttaactttatggcgcacctggatcaaggaatgtacccca 27662024  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27715039 - 27715092
Alignment:
Q  1 agcacaaacctgcaatgttgagattgagagaataacaggaagacggttaacttt 54  Q
    |||||||||||| | | |||||||||||||||||||| ||||||| ||||||||    
T  27715039 agcacaaacctgtattcttgagattgagagaataacaagaagacgattaacttt 27715092  T

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Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 27715139 - 27715180
Alignment:
Q  126 tcctcccctttctctgaaactcccacttccaccaatctttgc 167  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  27715139 tcctcctctgtctctgaaactcccacttccaccaatctttgc 27715180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 25514427 - 25514383
Alignment:
Q  84 caagtctttctagtattaggattcttcaatatgacatcctcctcc 128  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||    
T  25514427 caagtctttctattattaggattgttcaatattacatcctcctcc 25514383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 27703284 - 27703323
Alignment:
Q  46 gttaactttatgatggacctagactaaggaatgtacccca 85  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  27703284 gttaactttatgatggagctagaccaaggaatgtacccca 27703323  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 25583156 - 25583127
Alignment:
Q  182 tgaaggatcaatgaatctcacacccccctc 211  Q
    ||||||||||||||||||||||||||||||    
T  25583156 tgaaggatcaatgaatctcacacccccctc 25583127  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 193
Target Start/End: Complemental strand, 26146416 - 26146387
Alignment:
Q  164 ttgcataaattgtgataatgaaggatcaat 193  Q
    ||||||||||||||||||||||||||||||    
T  26146416 ttgcataaattgtgataatgaaggatcaat 26146387  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 27682516 - 27682475
Alignment:
Q  126 tcctcccctttctctgaaactcccacttccaccaatctttgc 167  Q
    |||||| || ||||||||||||| ||||||||||||||||||    
T  27682516 tcctcctctgtctctgaaactccaacttccaccaatctttgc 27682475  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 27703382 - 27703423
Alignment:
Q  51 ctttatgatggacctagactaaggaatgtaccccaagtcttt 92  Q
    |||| ||||| |||||||||||||||||||||||| ||||||    
T  27703382 ctttttgatgcacctagactaaggaatgtaccccatgtcttt 27703423  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 27078864 - 27078820
Alignment:
Q  123 tcctcctcccctttctctgaaactcccacttccaccaatctttgc 167  Q
    ||||||||| || |||| |||||||||||||||||||||| ||||    
T  27078864 tcctcctcctctgtctcggaaactcccacttccaccaatccttgc 27078820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 27703471 - 27703519
Alignment:
Q  119 atcctcctcctcccctttctctgaaactcccacttccaccaatctttgc 167  Q
    ||||||||| ||| || ||||||||||||||| ||||||| ||||||||    
T  27703471 atcctcctcttcctctgtctctgaaactcccatttccaccgatctttgc 27703519  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 29270329 - 29270396
Alignment:
Q  27 agagaataacaggaagacggttaactttatgatggacctagactaaggaatgtaccccaagtctttct 94  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  29270329 agagaataacaagaagacggttaactttataatggacctagactaaggtatgtaccccatgtctttct 29270396  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 29270443 - 29270484
Alignment:
Q  126 tcctcccctttctctgaaactcccacttccaccaatctttgc 167  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  29270443 tcctcctctgtctctgaaactcccacttccaccaatctttgc 29270484  T

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Target: scaffold0003 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 63462 - 63393
Alignment:
Q  14 aatgttgagattgagagaataacaggaagacggttaactttatgatggacctagactaaggaatgtaccc 83  Q
    ||||||||||||||||||||||||  ||  ||||||||||||||||| |||||||| |||||||||||||    
T  63462 aatgttgagattgagagaataacaacaaagcggttaactttatgatgaacctagaccaaggaatgtaccc 63393  T

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Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 16805 - 16764
Alignment:
Q  126 tcctcccctttctctgaaactcccacttccaccaatctttgc 167  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  16805 tcctcctctgtctctgaaactcccacttccaccaatctttgc 16764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16905 - 16852
Alignment:
Q  1 agcacaaacctgcaatgttgagattgagagaataacaggaagacggttaacttt 54  Q
    |||||||||||| | | |||||||||||||||||||| ||||||| ||||||||    
T  16905 agcacaaacctgtattcttgagattgagagaataacaagaagacgattaacttt 16852  T

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