View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_low_4 (Length: 608)
Name: NF13672_low_4
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 148 - 590
Target Start/End: Complemental strand, 13520225 - 13519783
Alignment:
| Q |
148 |
gaagaagaaaggcagaagcatagagcaactcattcctattcattcatcattcaaaactccatattcaaccgaaatctaacaaattcttcaaatgaattcg |
247 |
Q |
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| T |
13520225 |
gaagaagaaaggcagaagcatagagcaactcattcctattcattcatcattcaaaaatccatattcaacccaaatctaacaaattcttcaaatgaattcg |
13520126 |
T |
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| Q |
248 |
aatctaacgaatatgaatccagattcaacccagtaaaacgaatacgaatctaacaaattattcaaacaaatctgaatcattcatcgtgttgttcatcgga |
347 |
Q |
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| T |
13520125 |
aatctaacgaatatgaatccagattcaacccagtaaaacgaatacgaatctaacaaattattcaaacaaatctgaatcattcatggtgttgttcatccga |
13520026 |
T |
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| Q |
348 |
gctgtttctgtattccgtggcggcgtgattgtgcaaattgaagaacataggaaataaagggaaattaatatgtaaattcaattttgtagattaacttgtt |
447 |
Q |
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| T |
13520025 |
gctgtttccgtattccgtggaggcgtgattgtgcagattgaagagcataggaaataaagggaaattaatgtgtaaattcaattttgtagattaacttgtt |
13519926 |
T |
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| Q |
448 |
ggtgttgcttacaaatttacttactcatgtatagaacataggcgtgtttgtgcagattgcacccacttcacattgatgttgtgttgaattggtactttct |
547 |
Q |
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| T |
13519925 |
ggtgttgcttacaaatttacttactcatgtatagaacataggcgtgtttgtgcagattgcacccactttacattgatgttgtgttgaattggtactttct |
13519826 |
T |
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| Q |
548 |
ggaaatgataggtgtaggagatattctggaaaaatgggtactt |
590 |
Q |
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| T |
13519825 |
gaaaatgataggtgtaggagatattctggaaaaatgggtactt |
13519783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 160 - 326
Target Start/End: Complemental strand, 4126070 - 4125917
Alignment:
| Q |
160 |
cagaagcatagagcaactcattcctattcattcatcattcaaaactccatattcaaccgaaatctaacaaattcttcaaatgaattcgaatctaacgaat |
259 |
Q |
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| T |
4126070 |
cagaaacatagaacaactcattcttattcattcatcattcaagaattcatattcaaccctgatctaacaaattt-------------gaatctaacgaat |
4125984 |
T |
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| Q |
260 |
atgaatccagattcaacccagtaaaacgaatacgaatctaacaaattattcaaacaaatctgaatca |
326 |
Q |
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| T |
4125983 |
atgaatccagattcaacccagtaaaacgaatacgaatccaacaaattcttcaaacgaatctgaatca |
4125917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 13520362 - 13520328
Alignment:
| Q |
12 |
cgaagaatatagcacagtgctaatatttagaatga |
46 |
Q |
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| T |
13520362 |
cgaacaatatagcacagtgctaatatttagaatga |
13520328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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