View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13672_low_5 (Length: 580)
Name: NF13672_low_5
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 234 - 565
Target Start/End: Complemental strand, 33742809 - 33742479
Alignment:
| Q |
234 |
atttgaaactagtataaatgaaaaatgattattaatttgagcagaatatgaattcagttcatttgccaaacatgttactgccttgcagggaaagacacaa |
333 |
Q |
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| T |
33742809 |
atttgaaactagtataaatgaaaaatgattattaatttgagcagaatatgaattcagttcatttgccaaacatgttactgccttgcagggaaagacacaa |
33742710 |
T |
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| Q |
334 |
gaacatgaataagttcaatacatttgtcaaataatgatagaaagtgggaataaaattgtttgtacctcataatactcttggtactgattttcccatgttt |
433 |
Q |
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| T |
33742709 |
gaacatgaataagttcaatacatttgtcaa-tcatgatagaaagtgggaataaaattgtttgtacctcataatactcttggtactgattttcccatgttt |
33742611 |
T |
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| Q |
434 |
tctgtctgtaatgcctctcttcctcatttaaaaggtagccatcaacctatgcagcattttcgcagcgagaataatcaatgtcttatgcatgaccatgaaa |
533 |
Q |
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| T |
33742610 |
tctgtctgtaatgcctctcttcctcatttaaaaggtagccatcaacctatgcagcattttcacagcgagaataatcaatgtcttatgcatgaccatgaaa |
33742511 |
T |
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| Q |
534 |
tgatagtaaaatagcgcggacacaaatatgtg |
565 |
Q |
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| T |
33742510 |
tgatagtaaaatagcgcggacacaaatatgtg |
33742479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 33742788 - 33743024
Alignment:
| Q |
1 |
ttcatttatactagtttcaaatgggacaacattctttaataatcatttttggtttattattgtaggaaatgaagcagagacaagatcagatgtgagagac |
100 |
Q |
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| T |
33742788 |
ttcatttatactagtttcaaatgggacaacattctttaataatcatttttggtttattattgtaggaaatgaagcaaagacaagatcagatgtgagagac |
33742887 |
T |
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| Q |
101 |
gagacgacgcaagagattgtttcgagtatcgctagaattatatctgaatgttggatttcgaatgtagatagatacacctttttaaatatagctaagatgc |
200 |
Q |
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| T |
33742888 |
gagacgacgcaggagattgtttcgagtatcgctagaattatatctgaatgttggatttcgaatgtagatagatacacctttttaaatatagctaagatgc |
33742987 |
T |
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| Q |
201 |
atgtttggtgattgttttactttttgtggacatattt |
237 |
Q |
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| T |
33742988 |
atgtttggtgattgttttactttttgtggacatattt |
33743024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 382 - 550
Target Start/End: Complemental strand, 33731221 - 33731052
Alignment:
| Q |
382 |
aataaaattgtttgtacctcataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcatttaaaaggtagccatcaacct |
481 |
Q |
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||||||||||| ||||||||| |||||| ||| ||||||||||||| || ||| ||||| | ||||||||||||| |||||| | ||||||||| |
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| T |
33731221 |
aataaaattgtctgtacctcaagatactcgcggttctgattttcccatattatcttcctgtacgacttctcttcctcattgaaaaggaacgcatcaacct |
33731122 |
T |
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| Q |
482 |
atgcagcattttcgcagcgagaataatcaatgt-cttatgcatgaccatgaaatgatagtaaaatagcgc |
550 |
Q |
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| T |
33731121 |
aagcagcattttggcagcaagaataatcagtgtgtttatgcatgacaatgatctgatagtataatagcgc |
33731052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 33732988 - 33732909
Alignment:
| Q |
234 |
atttgaaactagtataaatgaaaaatgattattaatttgagcagaatatgaattcagttcatttgccaaacatgttactg |
313 |
Q |
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||||||||||| |||| ||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||| |
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| T |
33732988 |
atttgaaactaatatagatgaaaaatgagtattaatttgatcagaattcaaattcagttcatttgccaaacatgtcactg |
33732909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 33737673 - 33737621
Alignment:
| Q |
234 |
atttgaaactagtataaatgaaaaatgattattaatttgagcagaatatgaat |
286 |
Q |
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||||||||| | |||||||||||||||| ||||||||||| |||||||||| |
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| T |
33737673 |
atttgaaacaaatataaatgaaaaatgagtattaatttgatttgaatatgaat |
33737621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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