View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13672_low_7 (Length: 575)
Name: NF13672_low_7
Description: NF13672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13672_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 6089688 - 6089230
Alignment:
| Q |
19 |
cataattcatgttcttcttctaattctatcaaggatttagagtgttctaatttaatgatgcgtttttcaagagaagatcaaggaaaaagggtcatgaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6089688 |
cataattcatgttcttcttctaattctatcaaggatttagagtgttctaatttaatgatgcgtttttcaagagaagatcaaggaaaaagggtcatgaata |
6089589 |
T |
|
| Q |
119 |
tttcttcttctaatccttattttgagactttgaataacaatcaaggaaataataataacccttttctttatcaagcacaaaacattcaaaatcttagaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6089588 |
tttcttcttctaatccttattttgagactttgaataacaatcaaggaaataataataacccttttctttatcaagcacaaaacattcaaaatcttagaca |
6089489 |
T |
|
| Q |
219 |
atttgatgaacaacatagtagtacaagtactatgatgttgaataatcatgaacctttgtctttgtcactttcatcaaataaaagtgttagtagtaattta |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6089488 |
atttgatgaacaacatagtagtactagtactatgatgttgaataatcatgaacctttgtctttgtcactttcatcaaataaaagtgttagtagtaattta |
6089389 |
T |
|
| Q |
319 |
cctttggagttgaatctacaaagatatggatctatgatttatggtggtggaggtgtgattcaagggttggttgaaggaggaggaggaagtggtggttcag |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
6089388 |
cctttggagttgaatctacaaagatatggatctatgatttatggtggtggaggtgtgattcaaggtttggttgaaggagg---aggaagtggtggttcag |
6089292 |
T |
|
| Q |
419 |
ttccatttactggatatgcttctgttttgaaggattctaggtttttgaaaccagctcaagaa |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6089291 |
ttccatttactggatatgcttctgttttgaaggattctaggtttttgaaaccagctcaagaa |
6089230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University