View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13673_low_2 (Length: 332)
Name: NF13673_low_2
Description: NF13673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13673_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 26354599 - 26354905
Alignment:
| Q |
10 |
aagaaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354599 |
aagaaaatcattgatagccaagtctaattccagcttaacattgtcaattttcaaggcttgtaccctatgccatctaaacaataaagggtctccacggttg |
26354698 |
T |
|
| Q |
110 |
atcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctat |
209 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354699 |
atcaacatgggttgcggttgtaattttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctat |
26354798 |
T |
|
| Q |
210 |
caccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaataga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354799 |
caccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaataga |
26354898 |
T |
|
| Q |
310 |
atttcct |
316 |
Q |
| |
|
||||||| |
|
|
| T |
26354899 |
atttcct |
26354905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 9815480 - 9815174
Alignment:
| Q |
10 |
aagaaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttg |
109 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||||||||||||||||| |||||| || ||| |||| || |||||||||||||||||||| | ||| |
|
|
| T |
9815480 |
aagaaaatcatccatagccgagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagggtctccgtgattg |
9815381 |
T |
|
| Q |
110 |
atcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctat |
209 |
Q |
| |
|
||||||||||||| || ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9815380 |
atcaacatgggttctggctgtaaattttggaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatctat |
9815281 |
T |
|
| Q |
210 |
caccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaataga |
309 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||| ||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
9815280 |
caccaccaacagataattttgacaaattaactattgttttcttaaacaaacttaaatcgttataaatactagctaaaacagctggtgccaaagcaataga |
9815181 |
T |
|
| Q |
310 |
atttcct |
316 |
Q |
| |
|
||||||| |
|
|
| T |
9815180 |
atttcct |
9815174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 20015873 - 20016177
Alignment:
| Q |
10 |
aagaaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttg |
109 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| | ||||||||||||||| ||| || || ||| ||||||| |||||||||||||||||| || | ||| |
|
|
| T |
20015873 |
aagaaaatcatcaatagctgagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagggtcttcatgattg |
20015972 |
T |
|
| Q |
110 |
atcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctat |
209 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
20015973 |
atcaacatgggttgtggttgtaaaattttgaacctctcccacacccaaatttgaaccaaataaatgggtgattgaagtgtaacttctaaaggatacctat |
20016072 |
T |
|
| Q |
210 |
caccaccaaca-gataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatag |
308 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
20016073 |
caccacccacatgat-attttgacaaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaatag |
20016171 |
T |
|
| Q |
309 |
aatttc |
314 |
Q |
| |
|
||||| |
|
|
| T |
20016172 |
gatttc |
20016177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 75 - 306
Target Start/End: Complemental strand, 26647382 - 26647151
Alignment:
| Q |
75 |
tatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaa |
174 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26647382 |
tatgccacctaaacaacaaagggtctccttggttgatcaaattgggttgtggttgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaa |
26647283 |
T |
|
| Q |
175 |
cggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatat |
274 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||| | |||| ||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
26647282 |
gggtgattgaagagtaacttccaaaggatatctatcaccaccatcagaaatttttttcaaatcaacaagtgttttcttaaacaaacttaaatccttatat |
26647183 |
T |
|
| Q |
275 |
atgctagctaaaacagccggtgccaaagcaat |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
26647182 |
aagctagctaaaacagccggtgccaaagcaat |
26647151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 20036275 - 20036581
Alignment:
| Q |
10 |
aagaaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttg |
109 |
Q |
| |
|
|||||| |||| |||||| |||||||| ||| | ||||||||||||| ||||| | ||| ||||||| |||||||| |||||||| ||| |||| |
|
|
| T |
20036275 |
aagaaagtcatccatagccgagtctaatgccatcctaacattgtcaatcatcaagggcttaaccttatgccacctaaacaaaaaagggtccccatggttc |
20036374 |
T |
|
| Q |
110 |
atcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctat |
209 |
Q |
| |
|
| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
20036375 |
aacaacatgggttgtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattcaagagtaacttctaaaggaagtctat |
20036474 |
T |
|
| Q |
210 |
caccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaataga |
309 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
20036475 |
caccaccaacatgacattttgacaaatcaacaattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacg |
20036574 |
T |
|
| Q |
310 |
atttcct |
316 |
Q |
| |
|
||||||| |
|
|
| T |
20036575 |
atttcct |
20036581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 19838839 - 19838533
Alignment:
| Q |
10 |
aagaaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttg |
109 |
Q |
| |
|
|||||| |||| |||||| ||||||| ||| | ||| |||||||||| |||||| | || ||||||| |||||||| |||||||| || |||| |
|
|
| T |
19838839 |
aagaaagtcatccatagccgagtctaaagccatcctaatattgtcaattatcaaggccttaactttatgccacctaaacaaaaaagggtccccctggttc |
19838740 |
T |
|
| Q |
110 |
atcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctat |
209 |
Q |
| |
|
| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
19838739 |
aacaacattggttgtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatgtat |
19838640 |
T |
|
| Q |
210 |
caccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaataga |
309 |
Q |
| |
|
||| |||||||| ||||||||||||||| | ||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19838639 |
cacaaccaacaggatgttttgacaaatcaactgtttttttctttaacaaagttaaatcattatatatgctagctaaaacagctggtgccaaagcaataga |
19838540 |
T |
|
| Q |
310 |
atttcct |
316 |
Q |
| |
|
||||||| |
|
|
| T |
19838539 |
atttcct |
19838533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 75 - 316
Target Start/End: Complemental strand, 19951502 - 19951261
Alignment:
| Q |
75 |
tatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaa |
174 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||| ||| ||||||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
19951502 |
tatgccacctaaacaaaaaagggtctccatggtttatcggcatgggttgtggttgtaaatttttaaacctctcccaaatccaaatttgaaccaagtaaaa |
19951403 |
T |
|
| Q |
175 |
cggtgattgaagagtaacttctaaaggatatctatcaccaccaaca-gataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttata |
273 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||||| | ||| ||||||| ||||||||||||| |
|
|
| T |
19951402 |
gggtgattgaagagtaagttctaaaggatatctatcaccacccacatgat-attttgacaaatcaacaattgcttttttaaacaaagttaaatccttata |
19951304 |
T |
|
| Q |
274 |
tatgctagctaaaacagccggtgccaaagcaatagaatttcct |
316 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
19951303 |
tatgctagctaaaacagctggagccaaagcaataggatttcct |
19951261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 24 - 308
Target Start/End: Complemental strand, 19818992 - 19818702
Alignment:
| Q |
24 |
tagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttg |
123 |
Q |
| |
|
||||| |||||||| ||| | |||||||||||||||||||||| || || |||||| |||||||| |||||||||||| |||| |||||||||| ||| |
|
|
| T |
19818992 |
tagccgagtctaatgccatcctaacattgtcaatttccaaggcctgaacatcatgccacctaaacaaaaaagggtctccatggtttatcaacatggtttg |
19818893 |
T |
|
| Q |
124 |
cgg------ttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccacca |
217 |
Q |
| |
|
|| ||| | ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
19818892 |
tggcagtggttgcatatttttgaacctctcccacacccatatttgaaccaaataaaagggtgattgaagagtaagttctaaaggaaatctatcaccacca |
19818793 |
T |
|
| Q |
218 |
acagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatag |
308 |
Q |
| |
|
||||| |||||||||||||||| || |||||||||||| |||||||| ||||| ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
19818792 |
acagaatattttgacaaatcaactatttttttcttaaacaaacttaaatctttataaatgttagccaaaacagccggtgccaaagcaatag |
19818702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 19956530 - 19956224
Alignment:
| Q |
10 |
aagaaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttg |
109 |
Q |
| |
|
|||||| |||| |||||| |||||||| ||| | |||||||||||| | ||||| | ||| ||||||| |||||||| ||||||| | | |||| |
|
|
| T |
19956530 |
aagaaagtcatccatagccgagtctaatgccatcctaacattgtcaactatcaagggcttaaccttatgccacctaaacaaaaaagggttcctatggttc |
19956431 |
T |
|
| Q |
110 |
atcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctat |
209 |
Q |
| |
|
| |||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |
|
|
| T |
19956430 |
aacaacatgggttgtggctgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaagttctgaaggatatctat |
19956331 |
T |
|
| Q |
210 |
caccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaataga |
309 |
Q |
| |
|
||||||| |||| |||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19956330 |
caccacccacaggatattttgacaaatcaactgtttttttctttaacaaagttaaatccttatatatgctagctaaaacagctggtgccaaagcaatagg |
19956231 |
T |
|
| Q |
310 |
atttcct |
316 |
Q |
| |
|
||||||| |
|
|
| T |
19956230 |
atttcct |
19956224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 17115159 - 17114912
Alignment:
| Q |
10 |
aagaaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttg |
109 |
Q |
| |
|
||||||||||| || ||| ||||||||| | ||||||||||||||||||| || ||| || ||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
17115159 |
aagaaaatcatcgacagctaagtctaatgctagcttaacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagggtctccatggttg |
17115060 |
T |
|
| Q |
110 |
atcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctat |
209 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| || | || ||| ||||||||||||| |||||| |
|
|
| T |
17115059 |
atcaacatggattgtggttgtaaatttttgaacctctcccacatccaaatttgaaccaagtaaaagggcattcgacgagcaacttctaaaggaaatctat |
17114960 |
T |
|
| Q |
210 |
caccaccaacagataattttgacaaatcaacaatggttttcttaaaca |
257 |
Q |
| |
|
||||| ||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
17114959 |
caccataaacaggattttttgacaaatcaataatagttttcttaaaca |
17114912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 19849442 - 19849130
Alignment:
| Q |
10 |
aagaaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttg |
109 |
Q |
| |
|
||||||||||| |||||| |||||||| ||| | ||||||||||||||| |||||| || ||| |||||||||||||||||||||| || ||| ||||| |
|
|
| T |
19849442 |
aagaaaatcatccatagccgagtctaatgccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggatccccatggttg |
19849343 |
T |
|
| Q |
110 |
atcaacatgggttgcggttgt------aagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggat |
203 |
Q |
| |
|
||||||||| ||| || ||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| || || ||| |
|
|
| T |
19849342 |
gtcaacatggtttgtggctgtggttgcaaatttttgaacctctcccacacccaaatttgaaccaaataaaagggtgatttaagagtaatctccaagggaa |
19849243 |
T |
|
| Q |
204 |
atctatcaccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagc |
303 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
19849242 |
atctatcaccaccaacatgacattttgacaaatcagtgattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagc |
19849143 |
T |
|
| Q |
304 |
aatagaatttcct |
316 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
19849142 |
aatacgatttcct |
19849130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 75 - 316
Target Start/End: Complemental strand, 26653530 - 26653289
Alignment:
| Q |
75 |
tatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaa |
174 |
Q |
| |
|
||||||| || |||||| || ||||| ||| ||||||||| ||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26653530 |
tatgccacctcaacaatgaatggtcttcactattgatcaacttgggttgtggttgcaaatttgtgaacctctcccacacccaaatttgaaccaagtaaaa |
26653431 |
T |
|
| Q |
175 |
cggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatat |
274 |
Q |
| |
|
|||||| | ||| ||||||| |||||| ||||||||||||||||| | ||||||||||| ||||||| ||||||||||||| | || ||||||||| |
|
|
| T |
26653430 |
gggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacaattgttttcttaaacaaagtcaagtccttatat |
26653331 |
T |
|
| Q |
275 |
atgctagctaaaacagccggtgccaaagcaatagaatttcct |
316 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
26653330 |
atactagctaaaacagctggtgccaaagcaataggatttcct |
26653289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 75 - 308
Target Start/End: Complemental strand, 19812664 - 19812425
Alignment:
| Q |
75 |
tatgccatctaaacaataaagggtctccacggttgatcaacatgg------gttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaa |
168 |
Q |
| |
|
||||||| |||||||| |||||||| ||| ||||||||||||| | |||| ||||| || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19812664 |
tatgccacctaaacaaaaaagggtcgccatggttgatcaacatagtttgttgttgtggttgcaaatttttgaacctctcccaaacccaaatttgaaccaa |
19812565 |
T |
|
| Q |
169 |
gtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatcc |
268 |
Q |
| |
|
|||||| |||||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
19812564 |
gtaaaagggtgattgaagagtaatctccaagggaaatctatcaccaccaacaggatattttgacaaatcaacaattgttttcttaaacaaacttaaatct |
19812465 |
T |
|
| Q |
269 |
ttatatatgctagctaaaacagccggtgccaaagcaatag |
308 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
19812464 |
ttatatatgctagccaagacagctggtgccaaagcaatag |
19812425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 20046566 - 20046260
Alignment:
| Q |
10 |
aagaaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttg |
109 |
Q |
| |
|
||||||||||| || || |||||||| ||| ||||||||| ||||||| ||| || || ||| ||||||| ||||||||||||||||| | | ||| |
|
|
| T |
20046566 |
aagaaaatcatcgacagttgagtctaatgccaacttaacattatcaattttcaatgcgtgaaccttatgccacctaaacaataaagggtcgctgggattg |
20046467 |
T |
|
| Q |
110 |
atcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctat |
209 |
Q |
| |
|
|||||||||||||| ||| |||| ||| |||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||| ||| | |||| |||||| |
|
|
| T |
20046466 |
atcaacatgggttgtggtggtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggtgatagaatagtaaattcaacaggaaatctat |
20046367 |
T |
|
| Q |
210 |
caccaccaacagataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaataga |
309 |
Q |
| |
|
|||||||||| | ||||| ||| ||||| ||| || |||||||| | ||||||||||||||||||||| | |||||||| |||||||||||||| | |
|
|
| T |
20046366 |
caccaccaaccggatattttaacagatcaataattgtgttcttaaataaacttaaatccttatatatgctacccaaaacagcaggtgccaaagcaattgg |
20046267 |
T |
|
| Q |
310 |
atttcct |
316 |
Q |
| |
|
||||||| |
|
|
| T |
20046266 |
atttcct |
20046260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 19832301 - 19832123
Alignment:
| Q |
24 |
tagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttg |
123 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||| ||||||| | ||| ||||||| |||||||| || || || || ||| | |||||||||||| |
|
|
| T |
19832301 |
tagccaagtctaatgccatcctaacattgtcaattaccaaggccttaaccttatgccacctaaacaaaaatggttcccctttgttcaacaacatgggttg |
19832202 |
T |
|
| Q |
124 |
cggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaagga |
202 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19832201 |
tggatgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaagga |
19832123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 282
Target Start/End: Complemental strand, 30915016 - 30914817
Alignment:
| Q |
83 |
ctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgatt |
182 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||||| | |||||||| || ||||| ||||||||||| ||||||||||| ||||||| ||| ||||| | |
|
|
| T |
30915016 |
ctaaacaatgaagggtctccctggttgataaacatagtatgcggttgcaaattttttaacctctcccaaacccaaatttgtaccaagtcaaagggtgagt |
30914917 |
T |
|
| Q |
183 |
gaagagtaacttctaaaggatatctatcaccaccaac-agataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctag |
281 |
Q |
| |
|
|||||||||| || | |||| |||||||||||||||| ||| ||||||||||| |||| || ||||||||||||| |||||||| || |||||||||| |
|
|
| T |
30914916 |
gaagagtaacctccataggacatctatcaccaccaacttgat-attttgacaaaccaactattgttttcttaaacaaacttaaatctttgtatatgctag |
30914818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 19858512 - 19858343
Alignment:
| Q |
13 |
aaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatc |
112 |
Q |
| |
|
|||||||| |||||| |||||||| ||| |||||||||||||| || |||||| | ||| ||||||| |||||||||||||| |||||| | |||||| |
|
|
| T |
19858512 |
aaaatcatcaatagccgagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaaggttctccatgcttgatc |
19858413 |
T |
|
| Q |
113 |
aacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgatt |
182 |
Q |
| |
|
||||||||||| || | ||| ||||||||||| ||||| ||||||| ||||| ||||||||| ||||||| |
|
|
| T |
19858412 |
aacatgggttgtggctctaaatttttgaacctttcccaaacccaaacttgaagcaagtaaaagggtgatt |
19858343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 19989903 - 19989742
Alignment:
| Q |
75 |
tatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaa |
174 |
Q |
| |
|
||||||| |||||||| ||||||||| || |||||||| ||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
19989903 |
tatgccacctaaacaaaaaagggtcttcatagttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaa |
19989804 |
T |
|
| Q |
175 |
cggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataattttgacaaat |
236 |
Q |
| |
|
|||||||||||| || | || | ||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
19989803 |
gggtgattgaagaatagcctccatgggaagtctatcaccaccaacaggaagttttgacaaat |
19989742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 19944157 - 19943987
Alignment:
| Q |
13 |
aaaatcattgatagccaagtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatc |
112 |
Q |
| |
|
||||||||||||||| | |||||| ||| | ||||||||||||| |||||| | || ||||||| || ||||||| | |||||||| |||||| |
|
|
| T |
19944157 |
aaaatcattgatagctgaatctaatgccaaccccacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctccattattgatc |
19944058 |
T |
|
| Q |
113 |
aacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattg |
183 |
Q |
| |
|
||| | ||||| || || || ||||||||||| ||||| ||||||| |||||||| |||||| |||||||| |
|
|
| T |
19944057 |
aactttggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
19943987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 19853735 - 19853660
Alignment:
| Q |
233 |
aaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatag |
308 |
Q |
| |
|
||||||||||| |||||||||||| || ||||| ||||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
19853735 |
aaatcaacaatttttttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcaatag |
19853660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 24839869 - 24839944
Alignment:
| Q |
233 |
aaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatag |
308 |
Q |
| |
|
||||||||||| || |||||||||| |||||||| ||||||| |||||| |||||||| |||||||||| ||||| |
|
|
| T |
24839869 |
aaatcaacaattgtgttcttaaacaaccttaaatcgttatataagctagccaaaacagcaggtgccaaagaaatag |
24839944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 19853872 - 19853755
Alignment:
| Q |
75 |
tatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaa |
174 |
Q |
| |
|
||||||| || ||||||| | |||||||| |||||||||| | ||||| || || || ||| |||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
19853872 |
tatgccacctcaacaatacatggtctccattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaagcttgtaccaagtaaaa |
19853773 |
T |
|
| Q |
175 |
cggtgattgaagagtaac |
192 |
Q |
| |
|
|||||||| ||| |||| |
|
|
| T |
19853772 |
gggtgattgcagattaac |
19853755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 19943940 - 19943864
Alignment:
| Q |
232 |
caaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatag |
308 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||||||| |||||| |||||||| ||||||||||| |||| |
|
|
| T |
19943940 |
caaatcaacaatttgtttcttaaacaaactcaaatccttatataagctagccaaaacagcaggtgccaaagccatag |
19943864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 19858281 - 19858212
Alignment:
| Q |
247 |
tttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatagaatttcct |
316 |
Q |
| |
|
||||||||||| || ||||| ||||||| |||||| |||||||| ||||||||||| |||| ||||||| |
|
|
| T |
19858281 |
tttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcct |
19858212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 24839669 - 24839822
Alignment:
| Q |
30 |
agtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttg |
129 |
Q |
| |
|
|||||||| ||| | | ||||||||||||| |||||| | || ||||||| || ||||||| | |||||| | ||| |||| ||||||| || || |
|
|
| T |
24839669 |
agtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctcgattattgcccaacttgggttgtggctg |
24839768 |
T |
|
| Q |
130 |
taagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattg |
183 |
Q |
| |
|
|| ||||||||||| ||||| ||||||| |||||||| |||||| |||||||| |
|
|
| T |
24839769 |
caaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
24839822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 19971835 - 19971759
Alignment:
| Q |
232 |
caaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatag |
308 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
19971835 |
caaatcaacaatttgtttcttaaacagagttcaatccttatataagctagccaaaacagttggtgccaaagcaatag |
19971759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 135 - 316
Target Start/End: Complemental strand, 1717532 - 1717351
Alignment:
| Q |
135 |
ttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataattttgacaa |
234 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| |||||||||||| |||| || || | ||||||| |||||||||| |||||||||| |
|
|
| T |
1717532 |
ttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatattttgacaa |
1717433 |
T |
|
| Q |
235 |
atcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatagaatttcct |
316 |
Q |
| |
|
| |||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1717432 |
accaactattgttttcttaaacaaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaataggatttcct |
1717351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 306
Target Start/End: Original strand, 6397539 - 6397707
Alignment:
| Q |
138 |
tgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaac-agataattttgacaaat |
236 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||||| |||||| ||||||||| ||| | | || || ||||| ||||||| |||| |||| ||||||| |
|
|
| T |
6397539 |
tgaacctcttccacgcccaaacttgaaccaagtaaaaaggtgatagaagagtaaattcaacatgaaatttatcatcaccaacaagat-atttcgacaaat |
6397637 |
T |
|
| Q |
237 |
caacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaat |
306 |
Q |
| |
|
||| ||| ||||||||||| | |||||||||||||||| |||| ||||||| |||||||||||||| |
|
|
| T |
6397638 |
caataattgttttcttaaataaagataaatccttatatatgatagccaaaacagatggtgccaaagcaat |
6397707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 106 - 301
Target Start/End: Complemental strand, 6398611 - 6398413
Alignment:
| Q |
106 |
gttgatcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatat |
205 |
Q |
| |
|
||||||||||||| |||| ||||| |||||| ||||||||||||||||| ||| |||||||| |||||| ||||| ||||||| ||| | |||| || |
|
|
| T |
6398611 |
gttgatcaacatgagttgtggttgcaagtttgtgaacctctcccacacctaaacttgaaccacgtaaaaaggtgacaacagagtaaattcaacaggaaat |
6398512 |
T |
|
| Q |
206 |
ctatcaccaccaaca-gataattttgacaaatcaacaa-tggttttcttaaacacgcttaaatcct--tatatatgctagctaaaacagccggtgccaaa |
301 |
Q |
| |
|
|||||| || ||||| ||| ||||||||| ||||| || | |||||||||| | ||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
6398511 |
ctatcatcatcaacatgat-attttgacatatcaataattttttttcttaaataaagttaaatccttatatatatgctagctaaaacagctggtgccaaa |
6398413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 22651781 - 22651871
Alignment:
| Q |
226 |
ttttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatagaatttcct |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||| ||||| |||||||||| ||||||| |
|
|
| T |
22651781 |
ttttgacaaatcaacaattgttttcttaaacaaagttaaatccttatacatgctagccaaaacagctggtgcaaaagcaataggatttcct |
22651871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 22689445 - 22689530
Alignment:
| Q |
107 |
ttgatcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaac |
192 |
Q |
| |
|
|||||||||||||| | ||||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||| |
|
|
| T |
22689445 |
ttgatcaacatgggccgtggttgcaaatttttgaacctctcccacacccaaacttgaaccaagtaaaagggtgattgcagattaac |
22689530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 11544430 - 11544343
Alignment:
| Q |
96 |
ggtctccacggttgatcaacatgggttgcggttgtaagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattg |
183 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||| || ||||||||||||||||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
11544430 |
ggtctccattgttgatcaacttgggttttggttgcaaatttttgaacctctcccaaacccaaacttgaaccaagtaaatgggtgattg |
11544343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 22689550 - 22689625
Alignment:
| Q |
233 |
aaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatag |
308 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
22689550 |
aaatcaacaatttgtttcttaaacaaactcaaatccttatatatgctagccaaaacagcaggtgccaaagcaatag |
22689625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 22685596 - 22685641
Alignment:
| Q |
226 |
ttttgacaaatcaacaatggttttcttaaacacgcttaaatcctta |
271 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
22685596 |
ttttgacaaatcaacaattgttttcttaaaaaaacttaaatcctta |
22685641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 12579783 - 12579972
Alignment:
| Q |
30 |
agtctaattccagcttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttg |
129 |
Q |
| |
|
|||||||| | | ||||||||||||||||| |||||| || ||| ||| | | |||| ||||||||||||| ||||||||||| ||||| || ||||| |
|
|
| T |
12579783 |
agtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagggtctatgcggttgatcaatatggg-tgtggttg |
12579881 |
T |
|
| Q |
130 |
taagtttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaaca |
220 |
Q |
| |
|
||||| |||||||||||| | ||||| || | |||||||||| |||||| ||||||||| || | ||||||| ||||| |||||||| |
|
|
| T |
12579882 |
atagtttgtgaacctctcccgtatccaaacttaagccaagtaaaaaggtgatggaagagtaaattaaacaggatatatatcatcaccaaca |
12579972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 12497618 - 12497371
Alignment:
| Q |
43 |
cttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaagtttttgaac |
142 |
Q |
| |
|
|||||||||| |||||| |||||| | ||| ||||||| || ||||||||| | ||| |||||||||||||| |||| ||||| |||||| || | |
|
|
| T |
12497618 |
cttaacattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttgatcaacatgagttgtggttgcaagtttgcgagc |
12497519 |
T |
|
| Q |
143 |
ctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaa-cagataattttgacaaatcaaca |
241 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| ||||| ||| ||||| ||| | || | || ||| | |||||| |||| |||||||| ||||| | |
|
|
| T |
12497518 |
ctctccca-acccaaacatgaaccaagtaaaaaggtgagagaaaagtaaattcaacagaaaatatattatcaccaataagat-gttttgacagatcaata |
12497421 |
T |
|
| Q |
242 |
atggttttcttaaacacgcttaaatccttatatatgctagctaaaacagc |
291 |
Q |
| |
|
|| ||||||||||| | ||||||| |||| ||||||||| |||||||| |
|
|
| T |
12497420 |
attgttttcttaaataaagttaaatcgttatttatgctagccaaaacagc |
12497371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 12521483 - 12521236
Alignment:
| Q |
43 |
cttaacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaagtttttgaac |
142 |
Q |
| |
|
|||||||||| |||||| |||||| | ||| ||||||| || ||||||||| | ||| |||||||||||||| |||| ||||| |||||| || | |
|
|
| T |
12521483 |
cttaacattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttgatcaacatgagttgtggttgcaagtttgcgagc |
12521384 |
T |
|
| Q |
143 |
ctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaa-cagataattttgacaaatcaaca |
241 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| ||||| ||| ||||| ||| | || | || ||| | |||||| |||| |||||||| ||||| | |
|
|
| T |
12521383 |
ctctccca-acccaaacatgaaccaagtaaaaaggtgagagaaaagtaaattcaacagaaaatatattatcaccaataagat-gttttgacagatcaata |
12521286 |
T |
|
| Q |
242 |
atggttttcttaaacacgcttaaatccttatatatgctagctaaaacagc |
291 |
Q |
| |
|
|| ||||||||||| | ||||||| |||| ||||||||| |||||||| |
|
|
| T |
12521285 |
attgttttcttaaataaagttaaatcgttatttatgctagccaaaacagc |
12521236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 12495703 - 12495876
Alignment:
| Q |
46 |
aacattgtcaatttccaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaagtttttgaacctc |
145 |
Q |
| |
|
|||||||||||||| |||||| || ||| ||| | | |||| ||||||||||||| ||||||| |||||||| || ||||| ||||| |||||||| |
|
|
| T |
12495703 |
aacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagggtctatgtggttgatgaacatggg-tgtggttgatagtttgtgaacctc |
12495801 |
T |
|
| Q |
146 |
tcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaaca |
220 |
Q |
| |
|
|||| | ||||| || | |||| ||||| |||||| |||||||| || | ||||||| ||||| |||||||| |
|
|
| T |
12495802 |
tcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaataggatatatatcatcaccaaca |
12495876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 12581620 - 12581555
Alignment:
| Q |
225 |
attttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacag |
290 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||| | |||||||||||| ||||||||| ||||||| |
|
|
| T |
12581620 |
attttgacagatcaataattgttttcttaaataaagttaaatccttatttatgctagccaaaacag |
12581555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University